Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00894 and SMc00893 are separated by 36 nucleotides SMc00893 and SMc00892 are separated by 142 nucleotides
SMc00894: SMc00894 - 3-deoxy-D-manno-octulosonic-acid transferase, at 888,315 to 889,628
SMc00894
SMc00893: SMc00893 - hypothetical protein, at 889,665 to 890,375
SMc00893
SMc00892: SMc00892 - tetraacyldisaccharide 4'-kinase, at 890,518 to 891,558
SMc00892
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1 at 889.693 kb on + strand at 889.693 kb on + strand at 889.694 kb on - strand at 889.694 kb on - strand at 889.694 kb on - strand at 889.725 kb on + strand at 889.726 kb on - strand at 889.753 kb on - strand, within SMc00893 at 889.753 kb on - strand, within SMc00893 at 889.874 kb on + strand, within SMc00893 at 889.874 kb on + strand, within SMc00893 at 889.875 kb on - strand, within SMc00893 at 889.919 kb on + strand, within SMc00893 at 889.919 kb on + strand, within SMc00893 at 889.974 kb on + strand, within SMc00893 at 889.974 kb on + strand at 889.974 kb on + strand, within SMc00893 at 889.974 kb on + strand, within SMc00893 at 889.975 kb on - strand, within SMc00893 at 889.975 kb on - strand, within SMc00893 at 889.975 kb on - strand, within SMc00893 at 890.107 kb on - strand, within SMc00893 at 890.107 kb on - strand, within SMc00893 at 890.107 kb on - strand, within SMc00893 at 890.107 kb on - strand, within SMc00893 at 890.116 kb on - strand, within SMc00893 at 890.243 kb on + strand, within SMc00893 at 890.243 kb on + strand, within SMc00893 at 890.243 kb on + strand, within SMc00893 at 890.244 kb on - strand, within SMc00893 at 890.244 kb on - strand, within SMc00893 at 890.345 kb on + strand at 890.346 kb on - strand at 890.513 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 889,693 + -0.6 889,693 + -0.4 889,694 - +0.6 889,694 - -0.1 889,694 - -0.8 889,725 + +0.2 889,726 - -0.2 889,753 - SMc00893 0.12 +0.7 889,753 - SMc00893 0.12 +0.6 889,874 + SMc00893 0.29 +0.8 889,874 + SMc00893 0.29 +0.3 889,875 - SMc00893 0.30 +1.0 889,919 + SMc00893 0.36 -0.6 889,919 + SMc00893 0.36 +1.2 889,974 + SMc00893 0.43 +0.1 889,974 + -1.2 889,974 + SMc00893 0.43 +0.6 889,974 + SMc00893 0.43 -0.1 889,975 - SMc00893 0.44 +0.2 889,975 - SMc00893 0.44 +0.7 889,975 - SMc00893 0.44 -0.1 890,107 - SMc00893 0.62 +1.1 890,107 - SMc00893 0.62 +1.1 890,107 - SMc00893 0.62 +1.3 890,107 - SMc00893 0.62 +0.6 890,116 - SMc00893 0.63 -1.6 890,243 + SMc00893 0.81 +0.6 890,243 + SMc00893 0.81 +0.2 890,243 + SMc00893 0.81 -0.5 890,244 - SMc00893 0.81 +0.3 890,244 - SMc00893 0.81 -0.0 890,345 + -0.2 890,346 - -1.6 890,513 + +0.1
Or see this region's nucleotide sequence