Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00657 and SMc00656 are separated by 150 nucleotides SMc00656 and SMc00655 are separated by 172 nucleotides SMc00655 and SMc00654 are separated by 550 nucleotides
SMc00657: SMc00657 - hypothetical protein, at 2,920,299 to 2,920,574
SMc00657
SMc00656: SMc00656 - hypothetical protein, at 2,920,725 to 2,921,006
SMc00656
SMc00655: SMc00655 - hypothetical protein, at 2,921,179 to 2,921,529
SMc00655
SMc00654: SMc00654 - response regulator,controls chromosomal replication initiation protein, at 2,922,080 to 2,922,781
SMc00654
Position (kb)
2921
2922 Strain fitness (log2 ratio)
-2
-1
0
1 at 2920.690 kb on + strand at 2920.691 kb on - strand at 2920.803 kb on + strand, within SMc00656 at 2920.804 kb on - strand, within SMc00656 at 2921.007 kb on + strand at 2921.008 kb on - strand at 2921.092 kb on + strand at 2921.093 kb on - strand at 2921.157 kb on - strand at 2921.168 kb on + strand at 2921.169 kb on - strand at 2921.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,920,690 + -2.0 2,920,691 - +0.3 2,920,803 + SMc00656 0.28 +1.0 2,920,804 - SMc00656 0.28 -0.6 2,921,007 + +0.5 2,921,008 - +0.1 2,921,092 + +1.6 2,921,093 - -1.9 2,921,157 - +0.7 2,921,168 + -0.4 2,921,169 - +0.0 2,921,634 - -1.7
Or see this region's nucleotide sequence