Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00559 and SMc00560 overlap by 4 nucleotides SMc00560 and SMc00561 are separated by 151 nucleotides SMc00561 and SMc00562 are separated by 321 nucleotides SMc00562 and SMc00563 overlap by 4 nucleotides
SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460
SMc00559
SMc00560: SMc00560 - hypothetical protein, at 1,230,457 to 1,230,759
SMc00560
SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410
SMc00561
SMc00562: SMc00562 - transcriptional regulator, at 1,232,732 to 1,233,184
SMc00562
SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776
SMc00563
Position (kb)
1230
1231
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1230.071 kb on + strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.155 kb on + strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.386 kb on + strand at 1230.387 kb on - strand at 1230.387 kb on - strand at 1230.558 kb on - strand, within SMc00560 at 1230.558 kb on - strand, within SMc00560 at 1230.757 kb on + strand at 1230.922 kb on - strand at 1232.429 kb on - strand at 1232.504 kb on + strand at 1232.504 kb on + strand at 1232.505 kb on - strand at 1232.577 kb on + strand at 1232.617 kb on + strand at 1232.618 kb on - strand at 1232.623 kb on + strand at 1232.682 kb on + strand at 1232.686 kb on + strand at 1232.686 kb on + strand at 1232.710 kb on - strand at 1232.729 kb on + strand at 1233.232 kb on + strand at 1233.233 kb on - strand at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.361 kb on + strand, within SMc00563 at 1233.362 kb on - strand, within SMc00563
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,230,071 + SMc00559 0.49 -0.4 1,230,072 - SMc00559 0.50 -2.2 1,230,072 - SMc00559 0.50 +0.8 1,230,155 + SMc00559 0.60 +0.3 1,230,180 - SMc00559 0.64 +0.3 1,230,180 - SMc00559 0.64 +2.2 1,230,386 + +0.6 1,230,387 - -0.8 1,230,387 - +0.1 1,230,558 - SMc00560 0.33 -0.8 1,230,558 - SMc00560 0.33 -0.6 1,230,757 + +0.2 1,230,922 - +0.5 1,232,429 - +0.6 1,232,504 + +0.5 1,232,504 + -1.6 1,232,505 - +0.3 1,232,577 + +1.1 1,232,617 + -0.5 1,232,618 - +1.1 1,232,623 + +1.0 1,232,682 + +0.2 1,232,686 + -1.8 1,232,686 + -1.3 1,232,710 - -2.1 1,232,729 + +0.2 1,233,232 + +1.5 1,233,233 - +0.2 1,233,361 + SMc00563 0.11 +0.5 1,233,361 + SMc00563 0.11 +0.2 1,233,361 + SMc00563 0.11 -0.6 1,233,361 + SMc00563 0.11 -0.4 1,233,362 - SMc00563 0.11 -0.2
Or see this region's nucleotide sequence