Strain Fitness in Sinorhizobium meliloti 1021 around SMc00370

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00368 and SMc00369 are separated by 17 nucleotidesSMc00369 and SMc00370 are separated by 180 nucleotidesSMc00370 and SMc00371 are separated by 33 nucleotidesSMc00371 and SMc00372 are separated by 220 nucleotides SMc00368: SMc00368 - oxidoreductase, at 323,683 to 324,441 SMc00368 SMc00369: SMc00369 - oxidoreductase, at 324,459 to 324,662 SMc00369 SMc00370: SMc00370 - transcriptional regulator, at 324,843 to 325,733 SMc00370 SMc00371: SMc00371 - hypothetical protein, at 325,767 to 326,258 SMc00371 SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249 SMc00372 Position (kb) 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 323.886 kb on + strand, within SMc00368at 324.125 kb on + strand, within SMc00368at 324.291 kb on - strand, within SMc00368at 324.291 kb on - strand, within SMc00368at 324.293 kb on + strand, within SMc00368at 324.293 kb on + strand, within SMc00368at 324.293 kb on + strand, within SMc00368at 324.293 kb on + strand, within SMc00368at 324.294 kb on - strand, within SMc00368at 324.294 kb on - strand, within SMc00368at 324.294 kb on - strand, within SMc00368at 324.513 kb on - strand, within SMc00369at 324.693 kb on + strandat 324.728 kb on + strandat 324.778 kb on + strandat 325.263 kb on + strand, within SMc00370at 325.263 kb on + strand, within SMc00370at 325.276 kb on + strand, within SMc00370at 325.277 kb on - strand, within SMc00370at 325.447 kb on + strand, within SMc00370at 325.447 kb on + strand, within SMc00370at 325.447 kb on + strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.448 kb on - strand, within SMc00370at 325.449 kb on + strand, within SMc00370at 325.450 kb on - strand, within SMc00370at 325.566 kb on + strand, within SMc00370at 325.566 kb on + strand, within SMc00370at 325.566 kb on + strand, within SMc00370at 325.567 kb on - strand, within SMc00370at 325.593 kb on + strand, within SMc00370at 325.594 kb on - strand, within SMc00370at 325.768 kb on + strandat 325.924 kb on + strand, within SMc00371at 326.073 kb on + strand, within SMc00371at 326.200 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.203 kb on + strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.204 kb on - strand, within SMc00371at 326.219 kb on + strandat 326.227 kb on - strandat 326.385 kb on - strandat 326.385 kb on - strandat 326.497 kb on - strandat 326.584 kb on - strand, within SMc00372

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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323,886 + SMc00368 0.27 +1.1
324,125 + SMc00368 0.58 -0.1
324,291 - SMc00368 0.80 -0.9
324,291 - SMc00368 0.80 +0.4
324,293 + SMc00368 0.80 +0.0
324,293 + SMc00368 0.80 -0.7
324,293 + SMc00368 0.80 +0.8
324,293 + SMc00368 0.80 -0.3
324,294 - SMc00368 0.81 -0.8
324,294 - SMc00368 0.81 -1.8
324,294 - SMc00368 0.81 -1.6
324,513 - SMc00369 0.26 -0.8
324,693 + +0.6
324,728 + +0.1
324,778 + +0.1
325,263 + SMc00370 0.47 -0.1
325,263 + SMc00370 0.47 +0.2
325,276 + SMc00370 0.49 +0.6
325,277 - SMc00370 0.49 +0.7
325,447 + SMc00370 0.68 +0.5
325,447 + SMc00370 0.68 +0.0
325,447 + SMc00370 0.68 +2.6
325,448 - SMc00370 0.68 +0.2
325,448 - SMc00370 0.68 +0.4
325,448 - SMc00370 0.68 -1.9
325,448 - SMc00370 0.68 -0.0
325,448 - SMc00370 0.68 +1.4
325,448 - SMc00370 0.68 +0.1
325,448 - SMc00370 0.68 +1.1
325,449 + SMc00370 0.68 +0.7
325,450 - SMc00370 0.68 -0.9
325,566 + SMc00370 0.81 -0.9
325,566 + SMc00370 0.81 -0.0
325,566 + SMc00370 0.81 -0.3
325,567 - SMc00370 0.81 -0.6
325,593 + SMc00370 0.84 +0.3
325,594 - SMc00370 0.84 +0.0
325,768 + -1.4
325,924 + SMc00371 0.32 -0.8
326,073 + SMc00371 0.62 +0.5
326,200 + SMc00371 0.88 +1.1
326,203 + SMc00371 0.89 +1.2
326,203 + SMc00371 0.89 +1.7
326,203 + SMc00371 0.89 +0.3
326,203 + SMc00371 0.89 +0.5
326,204 - SMc00371 0.89 -1.6
326,204 - SMc00371 0.89 -0.2
326,204 - SMc00371 0.89 +0.2
326,204 - SMc00371 0.89 +1.0
326,204 - SMc00371 0.89 -0.9
326,204 - SMc00371 0.89 -1.7
326,219 + -0.9
326,227 - -0.4
326,385 - -0.4
326,385 - +0.4
326,497 - -0.8
326,584 - SMc00372 0.14 -0.4

Or see this region's nucleotide sequence