Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00349 and SMc00350 are separated by 58 nucleotides SMc00350 and SMc00351 are separated by 175 nucleotides SMc00351 and SMc00352 are separated by 1 nucleotides
SMc00349: SMc00349 - GTP-binding protein LepA, at 303,622 to 305,448
SMc00349
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 304.721 kb on + strand, within SMc00349 at 304.818 kb on - strand, within SMc00349 at 304.888 kb on - strand, within SMc00349 at 305.072 kb on + strand, within SMc00349 at 305.210 kb on + strand, within SMc00349 at 305.211 kb on - strand, within SMc00349 at 305.234 kb on + strand, within SMc00349 at 305.234 kb on + strand, within SMc00349 at 305.235 kb on - strand, within SMc00349 at 305.235 kb on - strand, within SMc00349 at 305.386 kb on - strand at 305.457 kb on + strand at 305.457 kb on + strand at 305.459 kb on + strand at 305.459 kb on + strand at 305.459 kb on + strand at 305.511 kb on - strand at 305.511 kb on - strand at 305.665 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.845 kb on - strand, within SMc00350 at 305.847 kb on + strand, within SMc00350 at 305.848 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.094 kb on - strand, within SMc00350 at 306.103 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.454 kb on - strand, within SMc00350 at 306.561 kb on - strand, within SMc00350 at 306.681 kb on + strand at 306.732 kb on - strand at 306.732 kb on - strand at 306.908 kb on + strand at 306.909 kb on - strand at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 304,721 + SMc00349 0.60 -0.8 304,818 - SMc00349 0.65 -0.6 304,888 - SMc00349 0.69 +2.2 305,072 + SMc00349 0.79 -1.1 305,210 + SMc00349 0.87 -0.7 305,211 - SMc00349 0.87 +0.2 305,234 + SMc00349 0.88 +0.3 305,234 + SMc00349 0.88 -0.8 305,235 - SMc00349 0.88 -0.7 305,235 - SMc00349 0.88 -1.7 305,386 - +0.1 305,457 + -0.2 305,457 + -2.5 305,459 + +0.6 305,459 + -0.0 305,459 + -2.6 305,511 - -0.0 305,511 - +1.5 305,665 - SMc00350 0.12 +0.1 305,692 - SMc00350 0.15 +0.3 305,692 - SMc00350 0.15 +0.0 305,692 - SMc00350 0.15 -0.1 305,845 - SMc00350 0.27 -0.7 305,847 + SMc00350 0.27 -0.3 305,848 - SMc00350 0.27 +0.0 305,954 - SMc00350 0.35 +0.0 305,954 - SMc00350 0.35 -0.2 306,060 - SMc00350 0.44 -0.8 306,060 - SMc00350 0.44 +0.8 306,094 - SMc00350 0.46 +0.5 306,103 + SMc00350 0.47 -0.4 306,348 + SMc00350 0.66 -0.5 306,348 + SMc00350 0.66 -1.2 306,348 + SMc00350 0.66 +0.1 306,349 - SMc00350 0.67 -0.8 306,349 - SMc00350 0.67 -0.5 306,349 - SMc00350 0.67 +0.3 306,349 - SMc00350 0.67 -0.9 306,357 + SMc00350 0.67 -1.2 306,357 + SMc00350 0.67 +0.6 306,358 - SMc00350 0.67 +0.1 306,358 - SMc00350 0.67 -0.7 306,454 - SMc00350 0.75 -2.9 306,561 - SMc00350 0.83 -0.2 306,681 + -0.0 306,732 - -0.0 306,732 - +0.2 306,908 + +0.6 306,909 - -1.1 307,252 - SMc00351 0.51 +0.5 307,509 + +0.8 307,510 - +0.0
Or see this region's nucleotide sequence