Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00333 and SMc00334 overlap by 1 nucleotides SMc00334 and SMc00335 are separated by 163 nucleotides SMc00335 and SMc00336 are separated by 413 nucleotides
SMc00333: SMc00333 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 286,978 to 288,345
SMc00333
SMc00334: SMc00334 - cytidylate kinase, at 288,345 to 288,983
SMc00334
SMc00335: SMc00335 - 30S ribosomal protein S1, at 289,147 to 290,853
SMc00335
SMc00336: SMc00336 - hypothetical protein, at 291,267 to 292,847
SMc00336
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.421 kb on - strand, within SMc00334 at 288.732 kb on + strand, within SMc00334 at 288.922 kb on + strand at 291.143 kb on + strand at 291.143 kb on + strand at 291.151 kb on + strand at 291.187 kb on - strand at 291.187 kb on - strand at 291.301 kb on + strand at 291.301 kb on + strand at 291.810 kb on + strand, within SMc00336
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 288,421 - SMc00334 0.12 -1.9 288,732 + SMc00334 0.61 -1.5 288,922 + +0.5 291,143 + -0.9 291,143 + +1.5 291,151 + -1.5 291,187 - -0.5 291,187 - +2.0 291,301 + -0.1 291,301 + -0.6 291,810 + SMc00336 0.34 -0.0
Or see this region's nucleotide sequence