Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0380 and SMa5019 are separated by 160 nucleotides SMa5019 and SMa0383 overlap by 4 nucleotides
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993
SMa5019
SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588
SMa0383
Position (kb) 204
205 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 203.710 kb on - strand, within SMa0380 at 203.710 kb on - strand, within SMa0380 at 203.736 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.836 kb on - strand, within SMa0380 at 203.867 kb on - strand, within SMa0380 at 204.435 kb on + strand at 204.454 kb on + strand at 204.549 kb on + strand at 204.556 kb on + strand at 204.569 kb on + strand at 204.569 kb on + strand at 204.570 kb on - strand at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 205.524 kb on + strand, within SMa0383 at 205.524 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.777 kb on - strand, within SMa0383
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 203,710 - SMa0380 0.66 +0.3 203,710 - SMa0380 0.66 +0.1 203,736 + SMa0380 0.67 +1.6 203,835 + SMa0380 0.72 +1.2 203,835 + SMa0380 0.72 +0.6 203,836 - SMa0380 0.72 -1.6 203,867 - SMa0380 0.74 +0.7 204,435 + +1.5 204,454 + +0.0 204,549 + -1.1 204,556 + +1.1 204,569 + -0.0 204,569 + -0.2 204,570 - +0.5 204,655 + SMa5019 0.24 -1.5 204,655 + SMa5019 0.24 +1.1 204,655 + SMa5019 0.24 +0.4 204,655 + SMa5019 0.24 +0.6 204,656 - SMa5019 0.24 +0.1 204,656 - SMa5019 0.24 +0.5 204,659 + SMa5019 0.25 +0.4 204,659 + SMa5019 0.25 +0.4 204,660 - SMa5019 0.25 -0.2 204,660 - SMa5019 0.25 +1.5 204,660 - SMa5019 0.25 -0.1 205,524 + SMa0383 0.33 -1.0 205,524 + SMa0383 0.33 -5.3 205,545 + SMa0383 0.35 +2.1 205,545 + SMa0383 0.35 -0.1 205,546 - SMa0383 0.35 -1.5 205,546 - SMa0383 0.35 -0.6 205,648 - SMa0383 0.41 -0.4 205,648 - SMa0383 0.41 +0.9 205,777 - SMa0383 0.49 -0.4
Or see this region's nucleotide sequence