Strain Fitness in Sinorhizobium meliloti 1021 around SMa2381

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2379 and SMa2381 are separated by 439 nucleotidesSMa2381 and SMa2383 are separated by 53 nucleotides SMa2379: SMa2379 - KatB catalase/peroxidase, at 1,342,282 to 1,344,465 SMa2379 SMa2381: SMa2381 - hypothetical protein, at 1,344,905 to 1,345,471 SMa2381 SMa2383: SMa2383 - oxidoreductase, at 1,345,525 to 1,346,493 SMa2383 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1344.010 kb on + strand, within SMa2379at 1344.011 kb on - strand, within SMa2379at 1344.011 kb on - strand, within SMa2379at 1344.103 kb on - strand, within SMa2379at 1344.103 kb on - strand, within SMa2379at 1344.159 kb on + strand, within SMa2379at 1344.165 kb on - strand, within SMa2379at 1344.165 kb on - strand, within SMa2379at 1344.165 kb on - strand, within SMa2379at 1344.165 kb on - strand, within SMa2379at 1344.210 kb on - strand, within SMa2379at 1344.321 kb on + strandat 1344.322 kb on - strandat 1344.322 kb on - strandat 1344.322 kb on - strandat 1344.421 kb on - strandat 1344.421 kb on - strandat 1344.447 kb on + strandat 1344.468 kb on + strandat 1344.468 kb on + strandat 1344.469 kb on - strandat 1344.469 kb on - strandat 1344.469 kb on - strandat 1344.469 kb on - strandat 1344.469 kb on - strandat 1344.469 kb on - strandat 1344.579 kb on + strandat 1344.698 kb on + strandat 1344.698 kb on + strandat 1344.716 kb on + strandat 1344.717 kb on - strandat 1344.744 kb on - strandat 1344.849 kb on + strandat 1344.849 kb on + strandat 1344.894 kb on - strandat 1344.898 kb on - strandat 1344.905 kb on - strandat 1345.005 kb on + strand, within SMa2381at 1345.020 kb on + strand, within SMa2381at 1345.037 kb on + strand, within SMa2381at 1345.067 kb on + strand, within SMa2381at 1345.067 kb on + strand, within SMa2381at 1345.068 kb on - strand, within SMa2381at 1345.089 kb on - strand, within SMa2381at 1345.282 kb on + strand, within SMa2381at 1345.282 kb on + strand, within SMa2381at 1345.332 kb on + strand, within SMa2381at 1345.333 kb on - strand, within SMa2381at 1345.333 kb on - strand, within SMa2381at 1345.333 kb on - strand, within SMa2381at 1345.469 kb on + strandat 1345.469 kb on + strandat 1345.469 kb on + strandat 1345.470 kb on - strandat 1345.470 kb on - strandat 1345.519 kb on - strandat 1345.520 kb on + strandat 1345.520 kb on + strandat 1345.520 kb on + strandat 1345.520 kb on + strandat 1345.520 kb on + strandat 1345.520 kb on + strandat 1345.521 kb on - strandat 1345.521 kb on - strandat 1345.521 kb on - strandat 1345.521 kb on - strandat 1345.521 kb on - strandat 1345.522 kb on + strandat 1345.522 kb on + strandat 1345.522 kb on + strandat 1345.522 kb on + strandat 1345.523 kb on - strandat 1345.523 kb on - strandat 1345.523 kb on - strandat 1345.523 kb on - strandat 1345.523 kb on - strandat 1345.523 kb on - strandat 1345.671 kb on + strand, within SMa2383at 1345.789 kb on + strand, within SMa2383at 1345.789 kb on + strand, within SMa2383at 1345.789 kb on + strand, within SMa2383at 1345.789 kb on + strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.790 kb on - strand, within SMa2383at 1345.804 kb on + strand, within SMa2383at 1345.804 kb on + strand, within SMa2383at 1345.824 kb on - strand, within SMa2383at 1345.925 kb on + strand, within SMa2383at 1346.001 kb on + strand, within SMa2383at 1346.001 kb on + strand, within SMa2383at 1346.002 kb on - strand, within SMa2383at 1346.002 kb on - strand, within SMa2383at 1346.002 kb on - strand, within SMa2383at 1346.002 kb on - strand, within SMa2383at 1346.004 kb on - strand, within SMa2383at 1346.025 kb on - strand, within SMa2383at 1346.025 kb on - strand, within SMa2383at 1346.036 kb on + strand, within SMa2383at 1346.161 kb on + strand, within SMa2383at 1346.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,344,010 + SMa2379 0.79 -0.8
1,344,011 - SMa2379 0.79 -0.1
1,344,011 - SMa2379 0.79 +0.4
1,344,103 - SMa2379 0.83 +1.3
1,344,103 - SMa2379 0.83 -0.0
1,344,159 + SMa2379 0.86 +0.8
1,344,165 - SMa2379 0.86 +0.7
1,344,165 - SMa2379 0.86 -0.6
1,344,165 - SMa2379 0.86 -1.8
1,344,165 - SMa2379 0.86 -0.1
1,344,210 - SMa2379 0.88 -0.7
1,344,321 + -0.5
1,344,322 - +0.4
1,344,322 - +1.9
1,344,322 - -0.5
1,344,421 - -1.6
1,344,421 - +0.0
1,344,447 + -0.5
1,344,468 + -0.1
1,344,468 + -0.8
1,344,469 - -1.3
1,344,469 - +0.2
1,344,469 - -0.5
1,344,469 - +0.3
1,344,469 - -0.5
1,344,469 - +0.1
1,344,579 + +0.2
1,344,698 + +0.5
1,344,698 + -0.3
1,344,716 + -0.0
1,344,717 - +0.6
1,344,744 - -0.4
1,344,849 + +0.5
1,344,849 + +0.4
1,344,894 - -1.4
1,344,898 - -0.1
1,344,905 - -1.0
1,345,005 + SMa2381 0.18 -0.2
1,345,020 + SMa2381 0.20 -0.1
1,345,037 + SMa2381 0.23 -0.3
1,345,067 + SMa2381 0.29 +0.7
1,345,067 + SMa2381 0.29 -1.4
1,345,068 - SMa2381 0.29 -2.8
1,345,089 - SMa2381 0.32 -0.6
1,345,282 + SMa2381 0.66 -0.4
1,345,282 + SMa2381 0.66 -0.8
1,345,332 + SMa2381 0.75 -0.9
1,345,333 - SMa2381 0.75 -2.3
1,345,333 - SMa2381 0.75 -1.1
1,345,333 - SMa2381 0.75 +0.1
1,345,469 + -0.4
1,345,469 + +0.5
1,345,469 + -0.2
1,345,470 - -1.0
1,345,470 - +2.5
1,345,519 - +0.0
1,345,520 + -0.6
1,345,520 + +1.1
1,345,520 + -0.3
1,345,520 + +3.6
1,345,520 + -0.8
1,345,520 + -0.4
1,345,521 - -0.4
1,345,521 - -0.1
1,345,521 - -0.4
1,345,521 - -0.7
1,345,521 - +1.6
1,345,522 + -0.1
1,345,522 + +0.8
1,345,522 + -0.5
1,345,522 + +0.1
1,345,523 - +0.7
1,345,523 - -1.3
1,345,523 - +0.5
1,345,523 - +0.1
1,345,523 - -0.3
1,345,523 - +0.7
1,345,671 + SMa2383 0.15 -1.2
1,345,789 + SMa2383 0.27 +0.5
1,345,789 + SMa2383 0.27 -1.1
1,345,789 + SMa2383 0.27 -0.6
1,345,789 + SMa2383 0.27 -0.5
1,345,790 - SMa2383 0.27 -0.3
1,345,790 - SMa2383 0.27 -0.4
1,345,790 - SMa2383 0.27 -2.8
1,345,790 - SMa2383 0.27 -1.0
1,345,790 - SMa2383 0.27 +0.4
1,345,790 - SMa2383 0.27 -1.5
1,345,790 - SMa2383 0.27 -2.3
1,345,790 - SMa2383 0.27 -0.1
1,345,804 + SMa2383 0.29 -0.9
1,345,804 + SMa2383 0.29 +0.3
1,345,824 - SMa2383 0.31 +2.4
1,345,925 + SMa2383 0.41 +0.5
1,346,001 + SMa2383 0.49 -0.1
1,346,001 + SMa2383 0.49 +1.0
1,346,002 - SMa2383 0.49 -0.6
1,346,002 - SMa2383 0.49 +0.6
1,346,002 - SMa2383 0.49 -0.4
1,346,002 - SMa2383 0.49 -1.7
1,346,004 - SMa2383 0.49 +0.3
1,346,025 - SMa2383 0.52 -0.6
1,346,025 - SMa2383 0.52 -0.3
1,346,036 + SMa2383 0.53 -0.9
1,346,161 + SMa2383 0.66 -0.8
1,346,414 - -2.6

Or see this region's nucleotide sequence