Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2379 and SMa2381 are separated by 439 nucleotides SMa2381 and SMa2383 are separated by 53 nucleotides
SMa2379: SMa2379 - KatB catalase/peroxidase, at 1,342,282 to 1,344,465
SMa2379
SMa2381: SMa2381 - hypothetical protein, at 1,344,905 to 1,345,471
SMa2381
SMa2383: SMa2383 - oxidoreductase, at 1,345,525 to 1,346,493
SMa2383
Position (kb)
1344
1345
1346 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1344.010 kb on + strand, within SMa2379 at 1344.011 kb on - strand, within SMa2379 at 1344.011 kb on - strand, within SMa2379 at 1344.103 kb on - strand, within SMa2379 at 1344.103 kb on - strand, within SMa2379 at 1344.159 kb on + strand, within SMa2379 at 1344.165 kb on - strand, within SMa2379 at 1344.165 kb on - strand, within SMa2379 at 1344.165 kb on - strand, within SMa2379 at 1344.165 kb on - strand, within SMa2379 at 1344.210 kb on - strand, within SMa2379 at 1344.321 kb on + strand at 1344.322 kb on - strand at 1344.322 kb on - strand at 1344.322 kb on - strand at 1344.421 kb on - strand at 1344.421 kb on - strand at 1344.447 kb on + strand at 1344.468 kb on + strand at 1344.468 kb on + strand at 1344.469 kb on - strand at 1344.469 kb on - strand at 1344.469 kb on - strand at 1344.469 kb on - strand at 1344.469 kb on - strand at 1344.469 kb on - strand at 1344.579 kb on + strand at 1344.698 kb on + strand at 1344.698 kb on + strand at 1344.716 kb on + strand at 1344.717 kb on - strand at 1344.744 kb on - strand at 1344.849 kb on + strand at 1344.849 kb on + strand at 1344.894 kb on - strand at 1344.898 kb on - strand at 1344.905 kb on - strand at 1345.005 kb on + strand, within SMa2381 at 1345.020 kb on + strand, within SMa2381 at 1345.037 kb on + strand, within SMa2381 at 1345.067 kb on + strand, within SMa2381 at 1345.067 kb on + strand, within SMa2381 at 1345.068 kb on - strand, within SMa2381 at 1345.089 kb on - strand, within SMa2381 at 1345.282 kb on + strand, within SMa2381 at 1345.282 kb on + strand, within SMa2381 at 1345.332 kb on + strand, within SMa2381 at 1345.333 kb on - strand, within SMa2381 at 1345.333 kb on - strand, within SMa2381 at 1345.333 kb on - strand, within SMa2381 at 1345.469 kb on + strand at 1345.469 kb on + strand at 1345.469 kb on + strand at 1345.470 kb on - strand at 1345.470 kb on - strand at 1345.519 kb on - strand at 1345.520 kb on + strand at 1345.520 kb on + strand at 1345.520 kb on + strand at 1345.520 kb on + strand at 1345.520 kb on + strand at 1345.520 kb on + strand at 1345.521 kb on - strand at 1345.521 kb on - strand at 1345.521 kb on - strand at 1345.521 kb on - strand at 1345.521 kb on - strand at 1345.522 kb on + strand at 1345.522 kb on + strand at 1345.522 kb on + strand at 1345.522 kb on + strand at 1345.523 kb on - strand at 1345.523 kb on - strand at 1345.523 kb on - strand at 1345.523 kb on - strand at 1345.523 kb on - strand at 1345.523 kb on - strand at 1345.671 kb on + strand, within SMa2383 at 1345.789 kb on + strand, within SMa2383 at 1345.789 kb on + strand, within SMa2383 at 1345.789 kb on + strand, within SMa2383 at 1345.789 kb on + strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.790 kb on - strand, within SMa2383 at 1345.804 kb on + strand, within SMa2383 at 1345.804 kb on + strand, within SMa2383 at 1345.824 kb on - strand, within SMa2383 at 1345.925 kb on + strand, within SMa2383 at 1346.001 kb on + strand, within SMa2383 at 1346.001 kb on + strand, within SMa2383 at 1346.002 kb on - strand, within SMa2383 at 1346.002 kb on - strand, within SMa2383 at 1346.002 kb on - strand, within SMa2383 at 1346.002 kb on - strand, within SMa2383 at 1346.004 kb on - strand, within SMa2383 at 1346.025 kb on - strand, within SMa2383 at 1346.025 kb on - strand, within SMa2383 at 1346.036 kb on + strand, within SMa2383 at 1346.161 kb on + strand, within SMa2383 at 1346.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,344,010 + SMa2379 0.79 -0.8 1,344,011 - SMa2379 0.79 -0.1 1,344,011 - SMa2379 0.79 +0.4 1,344,103 - SMa2379 0.83 +1.3 1,344,103 - SMa2379 0.83 -0.0 1,344,159 + SMa2379 0.86 +0.8 1,344,165 - SMa2379 0.86 +0.7 1,344,165 - SMa2379 0.86 -0.6 1,344,165 - SMa2379 0.86 -1.8 1,344,165 - SMa2379 0.86 -0.1 1,344,210 - SMa2379 0.88 -0.7 1,344,321 + -0.5 1,344,322 - +0.4 1,344,322 - +1.9 1,344,322 - -0.5 1,344,421 - -1.6 1,344,421 - +0.0 1,344,447 + -0.5 1,344,468 + -0.1 1,344,468 + -0.8 1,344,469 - -1.3 1,344,469 - +0.2 1,344,469 - -0.5 1,344,469 - +0.3 1,344,469 - -0.5 1,344,469 - +0.1 1,344,579 + +0.2 1,344,698 + +0.5 1,344,698 + -0.3 1,344,716 + -0.0 1,344,717 - +0.6 1,344,744 - -0.4 1,344,849 + +0.5 1,344,849 + +0.4 1,344,894 - -1.4 1,344,898 - -0.1 1,344,905 - -1.0 1,345,005 + SMa2381 0.18 -0.2 1,345,020 + SMa2381 0.20 -0.1 1,345,037 + SMa2381 0.23 -0.3 1,345,067 + SMa2381 0.29 +0.7 1,345,067 + SMa2381 0.29 -1.4 1,345,068 - SMa2381 0.29 -2.8 1,345,089 - SMa2381 0.32 -0.6 1,345,282 + SMa2381 0.66 -0.4 1,345,282 + SMa2381 0.66 -0.8 1,345,332 + SMa2381 0.75 -0.9 1,345,333 - SMa2381 0.75 -2.3 1,345,333 - SMa2381 0.75 -1.1 1,345,333 - SMa2381 0.75 +0.1 1,345,469 + -0.4 1,345,469 + +0.5 1,345,469 + -0.2 1,345,470 - -1.0 1,345,470 - +2.5 1,345,519 - +0.0 1,345,520 + -0.6 1,345,520 + +1.1 1,345,520 + -0.3 1,345,520 + +3.6 1,345,520 + -0.8 1,345,520 + -0.4 1,345,521 - -0.4 1,345,521 - -0.1 1,345,521 - -0.4 1,345,521 - -0.7 1,345,521 - +1.6 1,345,522 + -0.1 1,345,522 + +0.8 1,345,522 + -0.5 1,345,522 + +0.1 1,345,523 - +0.7 1,345,523 - -1.3 1,345,523 - +0.5 1,345,523 - +0.1 1,345,523 - -0.3 1,345,523 - +0.7 1,345,671 + SMa2383 0.15 -1.2 1,345,789 + SMa2383 0.27 +0.5 1,345,789 + SMa2383 0.27 -1.1 1,345,789 + SMa2383 0.27 -0.6 1,345,789 + SMa2383 0.27 -0.5 1,345,790 - SMa2383 0.27 -0.3 1,345,790 - SMa2383 0.27 -0.4 1,345,790 - SMa2383 0.27 -2.8 1,345,790 - SMa2383 0.27 -1.0 1,345,790 - SMa2383 0.27 +0.4 1,345,790 - SMa2383 0.27 -1.5 1,345,790 - SMa2383 0.27 -2.3 1,345,790 - SMa2383 0.27 -0.1 1,345,804 + SMa2383 0.29 -0.9 1,345,804 + SMa2383 0.29 +0.3 1,345,824 - SMa2383 0.31 +2.4 1,345,925 + SMa2383 0.41 +0.5 1,346,001 + SMa2383 0.49 -0.1 1,346,001 + SMa2383 0.49 +1.0 1,346,002 - SMa2383 0.49 -0.6 1,346,002 - SMa2383 0.49 +0.6 1,346,002 - SMa2383 0.49 -0.4 1,346,002 - SMa2383 0.49 -1.7 1,346,004 - SMa2383 0.49 +0.3 1,346,025 - SMa2383 0.52 -0.6 1,346,025 - SMa2383 0.52 -0.3 1,346,036 + SMa2383 0.53 -0.9 1,346,161 + SMa2383 0.66 -0.8 1,346,414 - -2.6
Or see this region's nucleotide sequence