Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2365 and SMa2367 overlap by 11 nucleotides SMa2367 and SMa2369 overlap by 4 nucleotides SMa2369 and SMa2371 are separated by 21 nucleotides
SMa2365: SMa2365 - ABC transporter ATP-binding protein, at 1,334,174 to 1,335,700
SMa2365
SMa2367: SMa2367 - ABC transporter permease, at 1,335,690 to 1,336,739
SMa2367
SMa2369: SMa2369 - ABC transporter permease, at 1,336,736 to 1,337,680
SMa2369
SMa2371: SMa2371 - cytosine deaminase, at 1,337,702 to 1,339,000
SMa2371
Position (kb)
1335
1336
1337 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1335.034 kb on + strand, within SMa2365 at 1335.318 kb on + strand, within SMa2365 at 1335.318 kb on + strand, within SMa2365 at 1335.318 kb on + strand, within SMa2365 at 1335.318 kb on + strand, within SMa2365 at 1335.318 kb on + strand, within SMa2365 at 1335.319 kb on - strand, within SMa2365 at 1335.319 kb on - strand, within SMa2365 at 1335.319 kb on - strand, within SMa2365 at 1335.319 kb on - strand, within SMa2365 at 1335.820 kb on - strand, within SMa2367 at 1335.875 kb on - strand, within SMa2367 at 1335.967 kb on - strand, within SMa2367 at 1336.146 kb on - strand, within SMa2367 at 1336.306 kb on + strand, within SMa2367 at 1336.306 kb on + strand, within SMa2367 at 1336.497 kb on + strand, within SMa2367 at 1336.498 kb on - strand, within SMa2367 at 1336.498 kb on - strand, within SMa2367 at 1336.498 kb on - strand, within SMa2367 at 1336.646 kb on + strand at 1336.646 kb on + strand at 1336.647 kb on - strand at 1336.656 kb on + strand at 1336.656 kb on + strand at 1336.656 kb on + strand at 1336.656 kb on + strand at 1336.657 kb on - strand at 1336.657 kb on - strand at 1336.660 kb on + strand at 1336.661 kb on - strand at 1336.723 kb on - strand at 1336.913 kb on + strand, within SMa2369 at 1336.913 kb on + strand, within SMa2369 at 1336.913 kb on + strand, within SMa2369 at 1336.914 kb on - strand, within SMa2369 at 1337.066 kb on + strand, within SMa2369 at 1337.066 kb on + strand, within SMa2369 at 1337.066 kb on + strand, within SMa2369 at 1337.067 kb on - strand, within SMa2369 at 1337.067 kb on - strand, within SMa2369 at 1337.067 kb on - strand, within SMa2369 at 1337.085 kb on + strand, within SMa2369 at 1337.198 kb on + strand, within SMa2369 at 1337.198 kb on + strand, within SMa2369 at 1337.199 kb on - strand, within SMa2369 at 1337.414 kb on - strand, within SMa2369 at 1337.445 kb on + strand, within SMa2369 at 1337.446 kb on - strand, within SMa2369
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,335,034 + SMa2365 0.56 -0.5 1,335,318 + SMa2365 0.75 -1.8 1,335,318 + SMa2365 0.75 +0.7 1,335,318 + SMa2365 0.75 +0.7 1,335,318 + SMa2365 0.75 +0.5 1,335,318 + SMa2365 0.75 -0.2 1,335,319 - SMa2365 0.75 -0.8 1,335,319 - SMa2365 0.75 +0.1 1,335,319 - SMa2365 0.75 +0.2 1,335,319 - SMa2365 0.75 -0.4 1,335,820 - SMa2367 0.12 -0.4 1,335,875 - SMa2367 0.18 -0.1 1,335,967 - SMa2367 0.26 -0.2 1,336,146 - SMa2367 0.43 -0.3 1,336,306 + SMa2367 0.59 +1.2 1,336,306 + SMa2367 0.59 +0.1 1,336,497 + SMa2367 0.77 +0.1 1,336,498 - SMa2367 0.77 -2.0 1,336,498 - SMa2367 0.77 -0.6 1,336,498 - SMa2367 0.77 -0.7 1,336,646 + -0.4 1,336,646 + -1.7 1,336,647 - -0.3 1,336,656 + -0.5 1,336,656 + +0.2 1,336,656 + -0.5 1,336,656 + -0.3 1,336,657 - -1.3 1,336,657 - +0.5 1,336,660 + +0.1 1,336,661 - -0.7 1,336,723 - -0.3 1,336,913 + SMa2369 0.19 -0.2 1,336,913 + SMa2369 0.19 -1.0 1,336,913 + SMa2369 0.19 -1.0 1,336,914 - SMa2369 0.19 -0.7 1,337,066 + SMa2369 0.35 -1.1 1,337,066 + SMa2369 0.35 +0.8 1,337,066 + SMa2369 0.35 -0.1 1,337,067 - SMa2369 0.35 +0.1 1,337,067 - SMa2369 0.35 +0.4 1,337,067 - SMa2369 0.35 +0.4 1,337,085 + SMa2369 0.37 -0.7 1,337,198 + SMa2369 0.49 -0.5 1,337,198 + SMa2369 0.49 +1.7 1,337,199 - SMa2369 0.49 -1.7 1,337,414 - SMa2369 0.72 -3.5 1,337,445 + SMa2369 0.75 +0.5 1,337,446 - SMa2369 0.75 -0.9
Or see this region's nucleotide sequence