Strain Fitness in Sinorhizobium meliloti 1021 around SMa2367

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2365 and SMa2367 overlap by 11 nucleotidesSMa2367 and SMa2369 overlap by 4 nucleotidesSMa2369 and SMa2371 are separated by 21 nucleotides SMa2365: SMa2365 - ABC transporter ATP-binding protein, at 1,334,174 to 1,335,700 SMa2365 SMa2367: SMa2367 - ABC transporter permease, at 1,335,690 to 1,336,739 SMa2367 SMa2369: SMa2369 - ABC transporter permease, at 1,336,736 to 1,337,680 SMa2369 SMa2371: SMa2371 - cytosine deaminase, at 1,337,702 to 1,339,000 SMa2371 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -3 -2 -1 0 1at 1335.034 kb on + strand, within SMa2365at 1335.318 kb on + strand, within SMa2365at 1335.318 kb on + strand, within SMa2365at 1335.318 kb on + strand, within SMa2365at 1335.318 kb on + strand, within SMa2365at 1335.318 kb on + strand, within SMa2365at 1335.319 kb on - strand, within SMa2365at 1335.319 kb on - strand, within SMa2365at 1335.319 kb on - strand, within SMa2365at 1335.319 kb on - strand, within SMa2365at 1335.820 kb on - strand, within SMa2367at 1335.875 kb on - strand, within SMa2367at 1335.967 kb on - strand, within SMa2367at 1336.146 kb on - strand, within SMa2367at 1336.306 kb on + strand, within SMa2367at 1336.306 kb on + strand, within SMa2367at 1336.497 kb on + strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.646 kb on + strandat 1336.646 kb on + strandat 1336.647 kb on - strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.657 kb on - strandat 1336.657 kb on - strandat 1336.660 kb on + strandat 1336.661 kb on - strandat 1336.723 kb on - strandat 1336.913 kb on + strand, within SMa2369at 1336.913 kb on + strand, within SMa2369at 1336.913 kb on + strand, within SMa2369at 1336.914 kb on - strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.085 kb on + strand, within SMa2369at 1337.198 kb on + strand, within SMa2369at 1337.198 kb on + strand, within SMa2369at 1337.199 kb on - strand, within SMa2369at 1337.414 kb on - strand, within SMa2369at 1337.445 kb on + strand, within SMa2369at 1337.446 kb on - strand, within SMa2369

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,335,034 + SMa2365 0.56 -0.5
1,335,318 + SMa2365 0.75 -1.8
1,335,318 + SMa2365 0.75 +0.7
1,335,318 + SMa2365 0.75 +0.7
1,335,318 + SMa2365 0.75 +0.5
1,335,318 + SMa2365 0.75 -0.2
1,335,319 - SMa2365 0.75 -0.8
1,335,319 - SMa2365 0.75 +0.1
1,335,319 - SMa2365 0.75 +0.2
1,335,319 - SMa2365 0.75 -0.4
1,335,820 - SMa2367 0.12 -0.4
1,335,875 - SMa2367 0.18 -0.1
1,335,967 - SMa2367 0.26 -0.2
1,336,146 - SMa2367 0.43 -0.3
1,336,306 + SMa2367 0.59 +1.2
1,336,306 + SMa2367 0.59 +0.1
1,336,497 + SMa2367 0.77 +0.1
1,336,498 - SMa2367 0.77 -2.0
1,336,498 - SMa2367 0.77 -0.6
1,336,498 - SMa2367 0.77 -0.7
1,336,646 + -0.4
1,336,646 + -1.7
1,336,647 - -0.3
1,336,656 + -0.5
1,336,656 + +0.2
1,336,656 + -0.5
1,336,656 + -0.3
1,336,657 - -1.3
1,336,657 - +0.5
1,336,660 + +0.1
1,336,661 - -0.7
1,336,723 - -0.3
1,336,913 + SMa2369 0.19 -0.2
1,336,913 + SMa2369 0.19 -1.0
1,336,913 + SMa2369 0.19 -1.0
1,336,914 - SMa2369 0.19 -0.7
1,337,066 + SMa2369 0.35 -1.1
1,337,066 + SMa2369 0.35 +0.8
1,337,066 + SMa2369 0.35 -0.1
1,337,067 - SMa2369 0.35 +0.1
1,337,067 - SMa2369 0.35 +0.4
1,337,067 - SMa2369 0.35 +0.4
1,337,085 + SMa2369 0.37 -0.7
1,337,198 + SMa2369 0.49 -0.5
1,337,198 + SMa2369 0.49 +1.7
1,337,199 - SMa2369 0.49 -1.7
1,337,414 - SMa2369 0.72 -3.5
1,337,445 + SMa2369 0.75 +0.5
1,337,446 - SMa2369 0.75 -0.9

Or see this region's nucleotide sequence