Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2349 and SMa2351 overlap by 4 nucleotides SMa2351 and SMa2353 are separated by 4 nucleotides SMa2353 and SMa2355 are separated by 183 nucleotides
SMa2349: SMa2349 - xanthine dehydrogenase iron-sulfur-binding subunit, at 1,323,061 to 1,323,708
SMa2349
SMa2351: SMa2351 - oxidoreductase, molybdopterin-binding subunit, at 1,323,705 to 1,324,655
SMa2351
SMa2353: SMa2353 - oxidoreductase, at 1,324,660 to 1,326,858
SMa2353
SMa2355: SMa2355 - DNA polymerase IV, at 1,327,042 to 1,328,151
SMa2355
Position (kb)
1324
1325
1326
1327 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1323.720 kb on + strand at 1323.909 kb on - strand, within SMa2351 at 1323.929 kb on + strand, within SMa2351 at 1323.966 kb on + strand, within SMa2351 at 1323.967 kb on - strand, within SMa2351 at 1324.066 kb on - strand, within SMa2351 at 1324.066 kb on - strand, within SMa2351 at 1324.072 kb on - strand, within SMa2351 at 1324.095 kb on - strand, within SMa2351 at 1324.095 kb on - strand, within SMa2351 at 1324.413 kb on + strand, within SMa2351 at 1324.709 kb on + strand at 1324.710 kb on - strand at 1324.768 kb on + strand at 1324.769 kb on - strand at 1324.775 kb on - strand at 1324.787 kb on + strand at 1324.801 kb on + strand at 1324.802 kb on - strand at 1324.802 kb on - strand at 1324.807 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.815 kb on + strand at 1324.815 kb on + strand at 1324.816 kb on - strand at 1324.940 kb on - strand, within SMa2353 at 1324.941 kb on + strand, within SMa2353 at 1324.942 kb on - strand, within SMa2353 at 1324.981 kb on + strand, within SMa2353 at 1325.060 kb on - strand, within SMa2353 at 1325.194 kb on + strand, within SMa2353 at 1325.194 kb on + strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.197 kb on - strand, within SMa2353 at 1325.454 kb on - strand, within SMa2353 at 1325.635 kb on + strand, within SMa2353 at 1325.635 kb on + strand at 1326.048 kb on + strand, within SMa2353 at 1326.048 kb on + strand, within SMa2353 at 1326.049 kb on - strand, within SMa2353 at 1326.073 kb on + strand, within SMa2353 at 1326.074 kb on - strand, within SMa2353 at 1326.074 kb on - strand, within SMa2353 at 1326.212 kb on + strand, within SMa2353 at 1326.212 kb on + strand, within SMa2353 at 1326.213 kb on - strand, within SMa2353 at 1326.214 kb on + strand, within SMa2353 at 1326.635 kb on - strand, within SMa2353 at 1326.774 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.778 kb on + strand at 1326.779 kb on - strand at 1326.779 kb on - strand at 1326.779 kb on - strand at 1326.794 kb on + strand at 1326.795 kb on - strand at 1326.866 kb on - strand at 1326.866 kb on - strand at 1326.961 kb on - strand at 1326.961 kb on - strand at 1326.983 kb on + strand at 1326.984 kb on - strand at 1326.998 kb on + strand at 1326.999 kb on - strand at 1327.219 kb on + strand, within SMa2355 at 1327.220 kb on - strand, within SMa2355 at 1327.318 kb on + strand, within SMa2355 at 1327.361 kb on - strand, within SMa2355 at 1327.361 kb on - strand, within SMa2355 at 1327.399 kb on + strand, within SMa2355 at 1327.513 kb on + strand, within SMa2355 at 1327.514 kb on - strand, within SMa2355 at 1327.744 kb on + strand, within SMa2355 at 1327.745 kb on - strand, within SMa2355 at 1327.779 kb on + strand, within SMa2355 at 1327.825 kb on - strand, within SMa2355 at 1327.825 kb on - strand, within SMa2355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,323,720 + -0.6 1,323,909 - SMa2351 0.21 +0.7 1,323,929 + SMa2351 0.24 -0.2 1,323,966 + SMa2351 0.27 -0.7 1,323,967 - SMa2351 0.28 -0.2 1,324,066 - SMa2351 0.38 -1.6 1,324,066 - SMa2351 0.38 -1.3 1,324,072 - SMa2351 0.39 +0.5 1,324,095 - SMa2351 0.41 -0.4 1,324,095 - SMa2351 0.41 -0.1 1,324,413 + SMa2351 0.74 -2.0 1,324,709 + -0.6 1,324,710 - -1.6 1,324,768 + -0.6 1,324,769 - +0.1 1,324,775 - +2.1 1,324,787 + +0.5 1,324,801 + +2.6 1,324,802 - -0.1 1,324,802 - +0.7 1,324,807 + +0.1 1,324,813 + +0.1 1,324,813 + +2.6 1,324,813 + -0.4 1,324,813 + -0.1 1,324,814 - -0.5 1,324,814 - -1.2 1,324,814 - -0.2 1,324,814 - +0.8 1,324,814 - +0.6 1,324,814 - +2.7 1,324,814 - +0.7 1,324,815 + -1.0 1,324,815 + +0.3 1,324,816 - -0.5 1,324,940 - SMa2353 0.13 -1.7 1,324,941 + SMa2353 0.13 -0.5 1,324,942 - SMa2353 0.13 -1.4 1,324,981 + SMa2353 0.15 -0.7 1,325,060 - SMa2353 0.18 -0.7 1,325,194 + SMa2353 0.24 +0.1 1,325,194 + SMa2353 0.24 -0.5 1,325,195 - SMa2353 0.24 +0.1 1,325,195 - SMa2353 0.24 -1.9 1,325,195 - SMa2353 0.24 -0.5 1,325,196 + SMa2353 0.24 +1.0 1,325,196 + SMa2353 0.24 -1.5 1,325,196 + SMa2353 0.24 +0.5 1,325,197 - SMa2353 0.24 -1.1 1,325,454 - SMa2353 0.36 +0.4 1,325,635 + SMa2353 0.44 +0.1 1,325,635 + +0.4 1,326,048 + SMa2353 0.63 -0.8 1,326,048 + SMa2353 0.63 -1.1 1,326,049 - SMa2353 0.63 +0.2 1,326,073 + SMa2353 0.64 -1.2 1,326,074 - SMa2353 0.64 +0.2 1,326,074 - SMa2353 0.64 -0.3 1,326,212 + SMa2353 0.71 -1.4 1,326,212 + SMa2353 0.71 +0.1 1,326,213 - SMa2353 0.71 -0.0 1,326,214 + SMa2353 0.71 -0.0 1,326,635 - SMa2353 0.90 +1.7 1,326,774 + -0.7 1,326,778 + -4.0 1,326,778 + -0.4 1,326,778 + +0.1 1,326,778 + +0.4 1,326,778 + +1.9 1,326,778 + +0.1 1,326,778 + -0.7 1,326,779 - +0.4 1,326,779 - +0.3 1,326,779 - +0.4 1,326,794 + -0.2 1,326,795 - -0.7 1,326,866 - -0.3 1,326,866 - -0.7 1,326,961 - +1.1 1,326,961 - -0.1 1,326,983 + -0.8 1,326,984 - +0.8 1,326,998 + -1.4 1,326,999 - -1.3 1,327,219 + SMa2355 0.16 -1.4 1,327,220 - SMa2355 0.16 +0.3 1,327,318 + SMa2355 0.25 +0.8 1,327,361 - SMa2355 0.29 -0.2 1,327,361 - SMa2355 0.29 +0.6 1,327,399 + SMa2355 0.32 -0.4 1,327,513 + SMa2355 0.42 -3.3 1,327,514 - SMa2355 0.43 +0.1 1,327,744 + SMa2355 0.63 +0.1 1,327,745 - SMa2355 0.63 -0.5 1,327,779 + SMa2355 0.66 +3.9 1,327,825 - SMa2355 0.71 +3.1 1,327,825 - SMa2355 0.71 -0.1
Or see this region's nucleotide sequence