Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2327 and SMa2329 are separated by 18 nucleotides SMa2329 and SMa2331 are separated by 2 nucleotides
SMa2327: SMa2327 - sensor protein, at 1,297,079 to 1,299,769
SMa2327
SMa2329: SMa2329 - potassium-transporting ATPase subunit C, at 1,299,788 to 1,300,357
SMa2329
SMa2331: SMa2331 - potassium-transporting ATPase subunit B, at 1,300,360 to 1,302,402
SMa2331
Position (kb)
1299
1300
1301 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1299.048 kb on + strand, within SMa2327 at 1299.048 kb on + strand, within SMa2327 at 1299.049 kb on - strand, within SMa2327 at 1299.289 kb on + strand, within SMa2327 at 1299.351 kb on - strand, within SMa2327 at 1299.351 kb on - strand, within SMa2327 at 1299.351 kb on - strand, within SMa2327 at 1299.374 kb on + strand, within SMa2327 at 1299.374 kb on + strand, within SMa2327 at 1299.375 kb on - strand, within SMa2327 at 1299.375 kb on - strand, within SMa2327 at 1299.375 kb on - strand, within SMa2327 at 1299.375 kb on - strand, within SMa2327 at 1299.375 kb on - strand, within SMa2327 at 1299.377 kb on - strand, within SMa2327 at 1299.377 kb on - strand, within SMa2327 at 1299.418 kb on + strand, within SMa2327 at 1299.425 kb on + strand, within SMa2327 at 1299.425 kb on + strand, within SMa2327 at 1299.824 kb on + strand at 1299.824 kb on + strand at 1299.825 kb on - strand at 1299.825 kb on - strand at 1299.825 kb on - strand at 1299.849 kb on - strand, within SMa2329 at 1299.849 kb on - strand, within SMa2329 at 1299.897 kb on - strand, within SMa2329 at 1299.967 kb on + strand, within SMa2329 at 1300.026 kb on - strand, within SMa2329 at 1300.026 kb on - strand, within SMa2329 at 1300.125 kb on + strand, within SMa2329 at 1300.125 kb on + strand, within SMa2329 at 1300.126 kb on - strand, within SMa2329 at 1300.126 kb on - strand, within SMa2329 at 1300.165 kb on - strand at 1300.165 kb on - strand, within SMa2329 at 1300.314 kb on - strand at 1300.439 kb on + strand at 1300.487 kb on + strand at 1300.587 kb on + strand, within SMa2331 at 1300.587 kb on + strand, within SMa2331 at 1300.593 kb on + strand, within SMa2331 at 1300.594 kb on - strand, within SMa2331 at 1300.594 kb on - strand, within SMa2331 at 1300.866 kb on + strand, within SMa2331 at 1300.866 kb on + strand, within SMa2331 at 1300.866 kb on + strand, within SMa2331 at 1300.867 kb on - strand, within SMa2331 at 1300.867 kb on - strand, within SMa2331 at 1300.867 kb on - strand, within SMa2331 at 1300.905 kb on - strand, within SMa2331 at 1301.006 kb on - strand, within SMa2331
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,299,048 + SMa2327 0.73 -1.1 1,299,048 + SMa2327 0.73 -1.9 1,299,049 - SMa2327 0.73 +0.0 1,299,289 + SMa2327 0.82 -0.3 1,299,351 - SMa2327 0.84 +0.1 1,299,351 - SMa2327 0.84 -0.3 1,299,351 - SMa2327 0.84 +1.0 1,299,374 + SMa2327 0.85 -0.5 1,299,374 + SMa2327 0.85 +1.1 1,299,375 - SMa2327 0.85 -0.3 1,299,375 - SMa2327 0.85 +0.1 1,299,375 - SMa2327 0.85 +2.4 1,299,375 - SMa2327 0.85 -0.1 1,299,375 - SMa2327 0.85 -0.1 1,299,377 - SMa2327 0.85 -0.3 1,299,377 - SMa2327 0.85 -0.6 1,299,418 + SMa2327 0.87 -1.4 1,299,425 + SMa2327 0.87 -1.0 1,299,425 + SMa2327 0.87 +0.6 1,299,824 + -1.5 1,299,824 + -2.2 1,299,825 - +1.8 1,299,825 - -1.7 1,299,825 - +0.1 1,299,849 - SMa2329 0.11 +0.2 1,299,849 - SMa2329 0.11 +2.1 1,299,897 - SMa2329 0.19 +2.6 1,299,967 + SMa2329 0.31 -0.9 1,300,026 - SMa2329 0.42 -0.4 1,300,026 - SMa2329 0.42 -1.1 1,300,125 + SMa2329 0.59 -1.3 1,300,125 + SMa2329 0.59 -0.6 1,300,126 - SMa2329 0.59 -0.6 1,300,126 - SMa2329 0.59 +0.7 1,300,165 - +0.1 1,300,165 - SMa2329 0.66 -0.6 1,300,314 - -0.3 1,300,439 + -0.7 1,300,487 + -1.5 1,300,587 + SMa2331 0.11 +1.7 1,300,587 + SMa2331 0.11 -0.4 1,300,593 + SMa2331 0.11 -2.9 1,300,594 - SMa2331 0.11 -1.5 1,300,594 - SMa2331 0.11 -2.4 1,300,866 + SMa2331 0.25 -0.6 1,300,866 + SMa2331 0.25 -1.5 1,300,866 + SMa2331 0.25 -0.3 1,300,867 - SMa2331 0.25 +1.3 1,300,867 - SMa2331 0.25 -0.3 1,300,867 - SMa2331 0.25 +0.6 1,300,905 - SMa2331 0.27 +0.7 1,301,006 - SMa2331 0.32 -0.2
Or see this region's nucleotide sequence