Strain Fitness in Sinorhizobium meliloti 1021 around SMa2241

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2237 and SMa2239 are separated by 144 nucleotidesSMa2239 and SMa2241 are separated by 35 nucleotidesSMa2241 and SMa2243 are separated by 17 nucleotides SMa2237: SMa2237 - hypothetical protein, at 1,253,110 to 1,254,114 SMa2237 SMa2239: SMa2239 - hypothetical protein, at 1,254,259 to 1,255,038 SMa2239 SMa2241: SMa2241 - hypothetical protein, at 1,255,074 to 1,256,321 SMa2241 SMa2243: SMa2243 - hypothetical protein, at 1,256,339 to 1,257,265 SMa2243 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1254.079 kb on + strandat 1254.079 kb on + strandat 1254.115 kb on - strandat 1254.115 kb on - strandat 1254.176 kb on + strandat 1254.203 kb on + strandat 1254.213 kb on + strandat 1254.219 kb on + strandat 1254.219 kb on + strandat 1255.031 kb on + strandat 1255.031 kb on + strandat 1255.091 kb on + strandat 1255.091 kb on + strandat 1255.091 kb on + strandat 1255.092 kb on - strandat 1255.092 kb on - strandat 1255.140 kb on - strandat 1255.156 kb on - strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.167 kb on + strandat 1255.168 kb on - strandat 1255.170 kb on - strandat 1255.171 kb on + strandat 1255.171 kb on + strandat 1255.184 kb on + strandat 1255.184 kb on + strandat 1255.248 kb on + strand, within SMa2241at 1255.278 kb on - strand, within SMa2241at 1255.358 kb on - strand, within SMa2241at 1255.358 kb on - strand, within SMa2241at 1255.581 kb on - strand, within SMa2241at 1255.581 kb on - strand, within SMa2241at 1255.585 kb on - strand, within SMa2241at 1255.585 kb on - strand, within SMa2241at 1255.585 kb on - strand, within SMa2241at 1255.611 kb on - strand, within SMa2241at 1255.612 kb on + strand, within SMa2241at 1255.650 kb on - strand, within SMa2241at 1255.675 kb on + strand, within SMa2241at 1255.675 kb on + strand, within SMa2241at 1255.881 kb on - strand, within SMa2241at 1255.984 kb on + strand, within SMa2241at 1255.984 kb on + strand, within SMa2241at 1255.985 kb on - strand, within SMa2241at 1255.985 kb on - strand, within SMa2241at 1255.989 kb on + strand, within SMa2241at 1255.989 kb on + strand, within SMa2241at 1255.989 kb on + strand, within SMa2241at 1255.989 kb on + strand, within SMa2241at 1255.990 kb on - strand, within SMa2241at 1255.992 kb on - strand, within SMa2241at 1255.992 kb on - strand, within SMa2241at 1256.062 kb on + strand, within SMa2241at 1256.063 kb on - strand, within SMa2241at 1256.063 kb on - strand, within SMa2241at 1256.063 kb on - strand, within SMa2241at 1256.124 kb on + strand, within SMa2241at 1256.124 kb on + strand, within SMa2241at 1256.125 kb on - strand, within SMa2241at 1256.125 kb on - strand, within SMa2241at 1256.133 kb on - strand, within SMa2241at 1256.133 kb on - strand, within SMa2241at 1256.137 kb on - strand, within SMa2241at 1256.137 kb on - strand, within SMa2241at 1256.167 kb on + strand, within SMa2241at 1256.168 kb on - strand, within SMa2241at 1256.168 kb on - strand, within SMa2241at 1256.168 kb on - strand, within SMa2241at 1256.259 kb on - strandat 1256.261 kb on + strandat 1256.300 kb on - strandat 1256.341 kb on - strandat 1256.345 kb on - strandat 1256.345 kb on - strandat 1256.372 kb on - strandat 1256.387 kb on + strandat 1256.391 kb on + strandat 1256.442 kb on + strand, within SMa2243at 1256.461 kb on + strand, within SMa2243at 1256.544 kb on + strand, within SMa2243at 1256.601 kb on + strand, within SMa2243at 1256.602 kb on - strand, within SMa2243at 1256.696 kb on - strand, within SMa2243at 1256.696 kb on - strand, within SMa2243at 1256.704 kb on + strand, within SMa2243at 1256.704 kb on + strand, within SMa2243at 1256.870 kb on + strand, within SMa2243at 1256.877 kb on - strand, within SMa2243at 1256.996 kb on + strand, within SMa2243at 1256.996 kb on + strand, within SMa2243at 1257.059 kb on + strand, within SMa2243at 1257.131 kb on - strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.132 kb on + strand, within SMa2243at 1257.133 kb on - strand, within SMa2243at 1257.133 kb on - strand, within SMa2243at 1257.134 kb on + strand, within SMa2243at 1257.135 kb on - strand, within SMa2243at 1257.135 kb on - strand, within SMa2243at 1257.135 kb on - strand, within SMa2243at 1257.135 kb on - strand, within SMa2243at 1257.250 kb on - strandat 1257.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,254,079 + -0.5
1,254,079 + +0.7
1,254,115 - -0.3
1,254,115 - +0.4
1,254,176 + +2.8
1,254,203 + -1.1
1,254,213 + -1.7
1,254,219 + +0.7
1,254,219 + +0.1
1,255,031 + +0.2
1,255,031 + +3.0
1,255,091 + +1.7
1,255,091 + +0.7
1,255,091 + -0.7
1,255,092 - +0.2
1,255,092 - +0.4
1,255,140 - +2.5
1,255,156 - +1.5
1,255,167 + +0.6
1,255,167 + +0.1
1,255,167 + +0.2
1,255,167 + +0.4
1,255,167 + +0.9
1,255,167 + +0.8
1,255,167 + +0.6
1,255,167 + +0.4
1,255,167 + +0.3
1,255,168 - +1.1
1,255,170 - +1.0
1,255,171 + -0.3
1,255,171 + +0.1
1,255,184 + +0.1
1,255,184 + -0.1
1,255,248 + SMa2241 0.14 +0.6
1,255,278 - SMa2241 0.16 +1.2
1,255,358 - SMa2241 0.23 +0.4
1,255,358 - SMa2241 0.23 +1.1
1,255,581 - SMa2241 0.41 +1.9
1,255,581 - SMa2241 0.41 +0.5
1,255,585 - SMa2241 0.41 -0.5
1,255,585 - SMa2241 0.41 -0.3
1,255,585 - SMa2241 0.41 +0.8
1,255,611 - SMa2241 0.43 +0.4
1,255,612 + SMa2241 0.43 +0.1
1,255,650 - SMa2241 0.46 +1.5
1,255,675 + SMa2241 0.48 -0.8
1,255,675 + SMa2241 0.48 +0.6
1,255,881 - SMa2241 0.65 +0.6
1,255,984 + SMa2241 0.73 +0.6
1,255,984 + SMa2241 0.73 -0.7
1,255,985 - SMa2241 0.73 +2.1
1,255,985 - SMa2241 0.73 +0.2
1,255,989 + SMa2241 0.73 +0.1
1,255,989 + SMa2241 0.73 +0.4
1,255,989 + SMa2241 0.73 +0.2
1,255,989 + SMa2241 0.73 +0.7
1,255,990 - SMa2241 0.73 +0.8
1,255,992 - SMa2241 0.74 +2.5
1,255,992 - SMa2241 0.74 -0.2
1,256,062 + SMa2241 0.79 +1.0
1,256,063 - SMa2241 0.79 +0.8
1,256,063 - SMa2241 0.79 +0.4
1,256,063 - SMa2241 0.79 +0.3
1,256,124 + SMa2241 0.84 +0.9
1,256,124 + SMa2241 0.84 -0.8
1,256,125 - SMa2241 0.84 +0.6
1,256,125 - SMa2241 0.84 +0.4
1,256,133 - SMa2241 0.85 -0.0
1,256,133 - SMa2241 0.85 +0.3
1,256,137 - SMa2241 0.85 +0.1
1,256,137 - SMa2241 0.85 -1.5
1,256,167 + SMa2241 0.88 +0.6
1,256,168 - SMa2241 0.88 +0.5
1,256,168 - SMa2241 0.88 -0.9
1,256,168 - SMa2241 0.88 -2.7
1,256,259 - +0.3
1,256,261 + +2.0
1,256,300 - -0.1
1,256,341 - +0.1
1,256,345 - -0.0
1,256,345 - +2.4
1,256,372 - +1.5
1,256,387 + +0.6
1,256,391 + +2.2
1,256,442 + SMa2243 0.11 +0.1
1,256,461 + SMa2243 0.13 -0.2
1,256,544 + SMa2243 0.22 +1.2
1,256,601 + SMa2243 0.28 +1.3
1,256,602 - SMa2243 0.28 -0.0
1,256,696 - SMa2243 0.39 +0.7
1,256,696 - SMa2243 0.39 -0.4
1,256,704 + SMa2243 0.39 -0.1
1,256,704 + SMa2243 0.39 +0.7
1,256,870 + SMa2243 0.57 +1.3
1,256,877 - SMa2243 0.58 +0.8
1,256,996 + SMa2243 0.71 +1.9
1,256,996 + SMa2243 0.71 +0.0
1,257,059 + SMa2243 0.78 -0.2
1,257,131 - SMa2243 0.85 +0.3
1,257,132 + SMa2243 0.86 +0.8
1,257,132 + SMa2243 0.86 +0.5
1,257,132 + SMa2243 0.86 +1.3
1,257,132 + SMa2243 0.86 +2.4
1,257,132 + SMa2243 0.86 -0.1
1,257,132 + SMa2243 0.86 +1.3
1,257,133 - SMa2243 0.86 +0.1
1,257,133 - SMa2243 0.86 -0.5
1,257,134 + SMa2243 0.86 +2.0
1,257,135 - SMa2243 0.86 +0.4
1,257,135 - SMa2243 0.86 -0.4
1,257,135 - SMa2243 0.86 +0.5
1,257,135 - SMa2243 0.86 +0.2
1,257,250 - +1.2
1,257,261 + +1.0

Or see this region's nucleotide sequence