Strain Fitness in Sinorhizobium meliloti 1021 around SMa2223

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2219 and SMa2221 overlap by 4 nucleotidesSMa2221 and SMa2223 overlap by 4 nucleotidesSMa2223 and SMa2225 are separated by 300 nucleotides SMa2219: SMa2219 - decarboxylase, at 1,242,938 to 1,243,531 SMa2219 SMa2221: SMa2221 - hypothetical protein, at 1,243,528 to 1,244,241 SMa2221 SMa2223: SMa2223 - oxidoreductase, at 1,244,238 to 1,245,344 SMa2223 SMa2225: SMa2225 - oxidoreductase, at 1,245,645 to 1,247,021 SMa2225 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1243.342 kb on + strand, within SMa2219at 1243.343 kb on - strand, within SMa2219at 1243.343 kb on - strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.397 kb on + strand, within SMa2219at 1243.543 kb on - strandat 1243.756 kb on - strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.871 kb on + strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1243.872 kb on - strand, within SMa2221at 1244.058 kb on - strand, within SMa2221at 1244.138 kb on - strand, within SMa2221at 1244.195 kb on + strandat 1244.211 kb on - strandat 1244.327 kb on + strandat 1244.421 kb on + strand, within SMa2223at 1244.421 kb on + strand, within SMa2223at 1244.421 kb on + strand, within SMa2223at 1244.501 kb on - strand, within SMa2223at 1244.570 kb on + strand, within SMa2223at 1244.645 kb on - strand, within SMa2223at 1244.654 kb on - strand, within SMa2223at 1244.767 kb on + strand, within SMa2223at 1245.182 kb on + strand, within SMa2223at 1245.182 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.186 kb on + strand, within SMa2223at 1245.187 kb on - strand, within SMa2223at 1245.187 kb on - strand, within SMa2223at 1245.216 kb on + strand, within SMa2223at 1245.343 kb on - strandat 1245.706 kb on + strandat 1245.706 kb on + strandat 1245.740 kb on - strandat 1245.904 kb on + strand, within SMa2225at 1245.944 kb on + strand, within SMa2225at 1245.944 kb on + strand, within SMa2225at 1245.945 kb on - strand, within SMa2225at 1245.945 kb on - strand, within SMa2225at 1246.126 kb on - strand, within SMa2225at 1246.126 kb on - strand, within SMa2225at 1246.254 kb on + strand, within SMa2225at 1246.254 kb on + strand, within SMa2225at 1246.255 kb on - strand, within SMa2225at 1246.255 kb on - strand, within SMa2225at 1246.311 kb on + strand, within SMa2225at 1246.311 kb on + strand, within SMa2225at 1246.312 kb on - strand, within SMa2225at 1246.313 kb on + strand, within SMa2225at 1246.314 kb on - strand, within SMa2225

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,243,342 + SMa2219 0.68 -0.7
1,243,343 - SMa2219 0.68 -0.4
1,243,343 - SMa2219 0.68 -0.0
1,243,397 + SMa2219 0.77 -0.7
1,243,397 + SMa2219 0.77 +1.0
1,243,397 + SMa2219 0.77 +2.1
1,243,543 - -0.1
1,243,756 - SMa2221 0.32 -0.3
1,243,871 + SMa2221 0.48 +0.0
1,243,871 + SMa2221 0.48 +0.4
1,243,871 + SMa2221 0.48 +0.6
1,243,871 + SMa2221 0.48 +0.6
1,243,871 + SMa2221 0.48 +0.4
1,243,872 - SMa2221 0.48 -0.5
1,243,872 - SMa2221 0.48 -0.3
1,243,872 - SMa2221 0.48 -0.4
1,243,872 - SMa2221 0.48 -0.2
1,243,872 - SMa2221 0.48 -0.4
1,243,872 - SMa2221 0.48 -0.2
1,243,872 - SMa2221 0.48 -1.1
1,243,872 - SMa2221 0.48 +0.7
1,243,872 - SMa2221 0.48 +1.6
1,244,058 - SMa2221 0.74 -1.7
1,244,138 - SMa2221 0.85 +0.2
1,244,195 + +0.4
1,244,211 - -0.7
1,244,327 + +0.7
1,244,421 + SMa2223 0.17 -0.1
1,244,421 + SMa2223 0.17 -0.8
1,244,421 + SMa2223 0.17 -1.0
1,244,501 - SMa2223 0.24 +1.1
1,244,570 + SMa2223 0.30 +0.4
1,244,645 - SMa2223 0.37 -2.4
1,244,654 - SMa2223 0.38 -0.2
1,244,767 + SMa2223 0.48 -1.2
1,245,182 + SMa2223 0.85 -0.4
1,245,182 + SMa2223 0.85 -1.3
1,245,186 + SMa2223 0.86 -0.3
1,245,186 + SMa2223 0.86 -0.3
1,245,186 + SMa2223 0.86 -0.5
1,245,187 - SMa2223 0.86 -0.4
1,245,187 - SMa2223 0.86 +0.3
1,245,216 + SMa2223 0.88 -0.2
1,245,343 - +0.3
1,245,706 + -0.6
1,245,706 + -1.2
1,245,740 - -4.9
1,245,904 + SMa2225 0.19 +0.1
1,245,944 + SMa2225 0.22 +0.2
1,245,944 + SMa2225 0.22 +0.4
1,245,945 - SMa2225 0.22 +0.6
1,245,945 - SMa2225 0.22 +1.8
1,246,126 - SMa2225 0.35 -0.1
1,246,126 - SMa2225 0.35 +1.9
1,246,254 + SMa2225 0.44 +1.4
1,246,254 + SMa2225 0.44 -0.0
1,246,255 - SMa2225 0.44 +0.3
1,246,255 - SMa2225 0.44 +0.1
1,246,311 + SMa2225 0.48 +0.7
1,246,311 + SMa2225 0.48 +0.5
1,246,312 - SMa2225 0.48 +1.2
1,246,313 + SMa2225 0.49 -2.5
1,246,314 - SMa2225 0.49 +1.1

Or see this region's nucleotide sequence