Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1990 and SMa1993 are separated by 372 nucleotides SMa1993 and SMa1995 are separated by 29 nucleotides SMa1995 and SMa1996 are separated by 2 nucleotides
SMa1990: SMa1990 - hypothetical protein, at 1,129,048 to 1,129,404
SMa1990
SMa1993: SMa1993 - hydrolase, at 1,129,777 to 1,130,433
SMa1993
SMa1995: SMa1995 - ABC transporter permease, at 1,130,463 to 1,131,413
SMa1995
SMa1996: SMa1996 - ABC transporter permease, at 1,131,416 to 1,132,387
SMa1996
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1129.402 kb on + strand at 1129.403 kb on - strand at 1129.422 kb on + strand at 1129.422 kb on + strand at 1129.423 kb on - strand at 1129.423 kb on - strand at 1129.423 kb on - strand at 1129.438 kb on - strand at 1129.722 kb on - strand at 1129.926 kb on - strand, within SMa1993 at 1129.926 kb on - strand, within SMa1993 at 1130.086 kb on + strand, within SMa1993 at 1130.086 kb on + strand, within SMa1993 at 1130.087 kb on - strand, within SMa1993 at 1130.133 kb on - strand, within SMa1993 at 1130.133 kb on - strand, within SMa1993 at 1130.211 kb on - strand, within SMa1993 at 1130.211 kb on - strand, within SMa1993 at 1130.211 kb on - strand, within SMa1993 at 1130.292 kb on - strand, within SMa1993 at 1130.339 kb on + strand, within SMa1993 at 1130.346 kb on - strand, within SMa1993 at 1130.414 kb on - strand at 1130.414 kb on - strand at 1130.485 kb on + strand at 1130.485 kb on + strand at 1130.711 kb on + strand, within SMa1995 at 1130.996 kb on - strand, within SMa1995 at 1131.039 kb on + strand, within SMa1995 at 1131.039 kb on + strand, within SMa1995 at 1131.039 kb on + strand, within SMa1995 at 1131.040 kb on - strand, within SMa1995 at 1131.040 kb on - strand, within SMa1995 at 1131.040 kb on - strand, within SMa1995 at 1131.124 kb on + strand, within SMa1995 at 1131.169 kb on + strand, within SMa1995 at 1131.170 kb on - strand, within SMa1995 at 1131.170 kb on - strand, within SMa1995 at 1131.170 kb on - strand, within SMa1995 at 1131.352 kb on + strand at 1131.353 kb on - strand at 1131.355 kb on + strand at 1131.355 kb on + strand at 1131.355 kb on + strand at 1131.425 kb on + strand at 1131.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,129,402 + +0.1 1,129,403 - -0.5 1,129,422 + +1.4 1,129,422 + +0.1 1,129,423 - +0.8 1,129,423 - +0.2 1,129,423 - -0.8 1,129,438 - +0.2 1,129,722 - -0.5 1,129,926 - SMa1993 0.23 +0.9 1,129,926 - SMa1993 0.23 +0.6 1,130,086 + SMa1993 0.47 -0.3 1,130,086 + SMa1993 0.47 -0.5 1,130,087 - SMa1993 0.47 +0.7 1,130,133 - SMa1993 0.54 +0.7 1,130,133 - SMa1993 0.54 +1.8 1,130,211 - SMa1993 0.66 -1.4 1,130,211 - SMa1993 0.66 -0.0 1,130,211 - SMa1993 0.66 +1.3 1,130,292 - SMa1993 0.78 +0.5 1,130,339 + SMa1993 0.86 -0.4 1,130,346 - SMa1993 0.87 +0.3 1,130,414 - +0.4 1,130,414 - -0.3 1,130,485 + +1.7 1,130,485 + -0.4 1,130,711 + SMa1995 0.26 -1.1 1,130,996 - SMa1995 0.56 +1.3 1,131,039 + SMa1995 0.61 -1.0 1,131,039 + SMa1995 0.61 -2.9 1,131,039 + SMa1995 0.61 +0.6 1,131,040 - SMa1995 0.61 -0.7 1,131,040 - SMa1995 0.61 -0.3 1,131,040 - SMa1995 0.61 -0.4 1,131,124 + SMa1995 0.70 -1.3 1,131,169 + SMa1995 0.74 -1.2 1,131,170 - SMa1995 0.74 -2.3 1,131,170 - SMa1995 0.74 -0.5 1,131,170 - SMa1995 0.74 +0.3 1,131,352 + -0.3 1,131,353 - -2.9 1,131,355 + -0.2 1,131,355 + -0.0 1,131,355 + +2.0 1,131,425 + -0.1 1,131,425 + -1.8
Or see this region's nucleotide sequence