Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1779 and SMa1780 are separated by 8 nucleotides SMa1780 and SMa1782 are separated by 91 nucleotides SMa1782 and SMa1783 are separated by 125 nucleotides SMa1783 and SMa1784 are separated by 79 nucleotides SMa1784 and SMa1787 are separated by 39 nucleotides
SMa1779: SMa1779 - hypothetical protein, at 1,008,864 to 1,009,310
SMa1779
SMa1780: SMa1780 - hypothetical protein, at 1,009,319 to 1,009,762
SMa1780
SMa1782: SMa1782 - LysR family transcriptional regulator, at 1,009,854 to 1,010,747
SMa1782
SMa1783: SMa1783 - hypothetical protein, at 1,010,873 to 1,011,049
SMa1783
SMa1784: SMa1784 - hypothetical protein, at 1,011,129 to 1,011,473
SMa1784
SMa1787: SMa1787 - transposase, fragment, at 1,011,513 to 1,011,938
SMa1787
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1008.904 kb on + strand at 1008.905 kb on - strand at 1008.905 kb on - strand at 1009.179 kb on + strand, within SMa1779 at 1009.230 kb on + strand, within SMa1779 at 1009.282 kb on + strand at 1009.282 kb on + strand at 1009.282 kb on + strand at 1009.282 kb on + strand at 1009.282 kb on + strand at 1009.283 kb on - strand at 1009.283 kb on - strand at 1009.283 kb on - strand at 1009.283 kb on - strand at 1009.283 kb on - strand at 1009.286 kb on + strand at 1009.320 kb on + strand at 1009.321 kb on - strand at 1009.324 kb on + strand at 1009.324 kb on + strand at 1009.324 kb on + strand at 1009.325 kb on - strand at 1009.330 kb on - strand at 1009.395 kb on + strand, within SMa1780 at 1009.404 kb on + strand, within SMa1780 at 1009.404 kb on + strand, within SMa1780 at 1009.404 kb on + strand, within SMa1780 at 1009.405 kb on - strand, within SMa1780 at 1009.405 kb on - strand, within SMa1780 at 1009.412 kb on + strand, within SMa1780 at 1009.412 kb on + strand, within SMa1780 at 1009.412 kb on + strand, within SMa1780 at 1009.412 kb on + strand, within SMa1780 at 1009.412 kb on + strand, within SMa1780 at 1009.413 kb on - strand, within SMa1780 at 1009.675 kb on - strand, within SMa1780 at 1009.693 kb on + strand, within SMa1780 at 1009.791 kb on + strand at 1009.791 kb on + strand at 1009.792 kb on - strand at 1009.792 kb on - strand at 1009.801 kb on + strand at 1009.802 kb on - strand at 1009.803 kb on + strand at 1009.803 kb on + strand at 1009.933 kb on + strand at 1009.934 kb on - strand at 1010.160 kb on + strand, within SMa1782 at 1010.436 kb on - strand, within SMa1782 at 1010.459 kb on + strand, within SMa1782 at 1010.533 kb on + strand, within SMa1782 at 1010.533 kb on + strand, within SMa1782 at 1010.570 kb on + strand, within SMa1782 at 1010.571 kb on - strand, within SMa1782 at 1010.571 kb on - strand, within SMa1782 at 1010.650 kb on + strand, within SMa1782 at 1010.651 kb on - strand, within SMa1782 at 1010.765 kb on + strand at 1010.766 kb on - strand at 1010.766 kb on - strand at 1010.766 kb on - strand at 1010.877 kb on + strand at 1011.073 kb on + strand at 1011.110 kb on + strand at 1011.111 kb on - strand at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.175 kb on + strand, within SMa1784 at 1011.176 kb on - strand, within SMa1784 at 1011.176 kb on - strand, within SMa1784 at 1011.176 kb on - strand, within SMa1784 at 1011.176 kb on - strand, within SMa1784 at 1011.176 kb on - strand, within SMa1784 at 1011.683 kb on - strand, within SMa1787
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,008,904 + -0.2 1,008,905 - -0.7 1,008,905 - +0.6 1,009,179 + SMa1779 0.70 -0.1 1,009,230 + SMa1779 0.82 +0.1 1,009,282 + +0.3 1,009,282 + +0.7 1,009,282 + +1.8 1,009,282 + +0.2 1,009,282 + +0.2 1,009,283 - -0.9 1,009,283 - +1.1 1,009,283 - -0.5 1,009,283 - +0.9 1,009,283 - -0.4 1,009,286 + +0.1 1,009,320 + -0.5 1,009,321 - -1.2 1,009,324 + +0.0 1,009,324 + +0.1 1,009,324 + -0.1 1,009,325 - +1.1 1,009,330 - -0.8 1,009,395 + SMa1780 0.17 -0.3 1,009,404 + SMa1780 0.19 -1.5 1,009,404 + SMa1780 0.19 +1.1 1,009,404 + SMa1780 0.19 +1.7 1,009,405 - SMa1780 0.19 -0.7 1,009,405 - SMa1780 0.19 -0.9 1,009,412 + SMa1780 0.21 -1.9 1,009,412 + SMa1780 0.21 -0.2 1,009,412 + SMa1780 0.21 +0.4 1,009,412 + SMa1780 0.21 -1.0 1,009,412 + SMa1780 0.21 +0.4 1,009,413 - SMa1780 0.21 +1.0 1,009,675 - SMa1780 0.80 -0.0 1,009,693 + SMa1780 0.84 +1.3 1,009,791 + +2.3 1,009,791 + -0.4 1,009,792 - -0.0 1,009,792 - -2.2 1,009,801 + -0.2 1,009,802 - +2.2 1,009,803 + +0.2 1,009,803 + +0.9 1,009,933 + -1.2 1,009,934 - +0.4 1,010,160 + SMa1782 0.34 +0.1 1,010,436 - SMa1782 0.65 -0.0 1,010,459 + SMa1782 0.68 +0.2 1,010,533 + SMa1782 0.76 +0.7 1,010,533 + SMa1782 0.76 -0.6 1,010,570 + SMa1782 0.80 +0.2 1,010,571 - SMa1782 0.80 +1.6 1,010,571 - SMa1782 0.80 +0.4 1,010,650 + SMa1782 0.89 -0.6 1,010,651 - SMa1782 0.89 +2.4 1,010,765 + +0.0 1,010,766 - -0.4 1,010,766 - -0.3 1,010,766 - -0.2 1,010,877 + +0.1 1,011,073 + -0.0 1,011,110 + -1.2 1,011,111 - +1.2 1,011,175 + SMa1784 0.13 -0.0 1,011,175 + SMa1784 0.13 +1.3 1,011,175 + SMa1784 0.13 -0.7 1,011,175 + SMa1784 0.13 +0.1 1,011,175 + SMa1784 0.13 +0.1 1,011,175 + SMa1784 0.13 -0.7 1,011,175 + SMa1784 0.13 -0.2 1,011,176 - SMa1784 0.14 +0.1 1,011,176 - SMa1784 0.14 +0.5 1,011,176 - SMa1784 0.14 +0.3 1,011,176 - SMa1784 0.14 +0.3 1,011,176 - SMa1784 0.14 -0.3 1,011,683 - SMa1787 0.40 -0.1
Or see this region's nucleotide sequence