Strain Fitness in Sinorhizobium meliloti 1021 around SMa1782

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1779 and SMa1780 are separated by 8 nucleotidesSMa1780 and SMa1782 are separated by 91 nucleotidesSMa1782 and SMa1783 are separated by 125 nucleotidesSMa1783 and SMa1784 are separated by 79 nucleotidesSMa1784 and SMa1787 are separated by 39 nucleotides SMa1779: SMa1779 - hypothetical protein, at 1,008,864 to 1,009,310 SMa1779 SMa1780: SMa1780 - hypothetical protein, at 1,009,319 to 1,009,762 SMa1780 SMa1782: SMa1782 - LysR family transcriptional regulator, at 1,009,854 to 1,010,747 SMa1782 SMa1783: SMa1783 - hypothetical protein, at 1,010,873 to 1,011,049 SMa1783 SMa1784: SMa1784 - hypothetical protein, at 1,011,129 to 1,011,473 SMa1784 SMa1787: SMa1787 - transposase, fragment, at 1,011,513 to 1,011,938 SMa1787 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -2 -1 0 1 2at 1008.904 kb on + strandat 1008.905 kb on - strandat 1008.905 kb on - strandat 1009.179 kb on + strand, within SMa1779at 1009.230 kb on + strand, within SMa1779at 1009.282 kb on + strandat 1009.282 kb on + strandat 1009.282 kb on + strandat 1009.282 kb on + strandat 1009.282 kb on + strandat 1009.283 kb on - strandat 1009.283 kb on - strandat 1009.283 kb on - strandat 1009.283 kb on - strandat 1009.283 kb on - strandat 1009.286 kb on + strandat 1009.320 kb on + strandat 1009.321 kb on - strandat 1009.324 kb on + strandat 1009.324 kb on + strandat 1009.324 kb on + strandat 1009.325 kb on - strandat 1009.330 kb on - strandat 1009.395 kb on + strand, within SMa1780at 1009.404 kb on + strand, within SMa1780at 1009.404 kb on + strand, within SMa1780at 1009.404 kb on + strand, within SMa1780at 1009.405 kb on - strand, within SMa1780at 1009.405 kb on - strand, within SMa1780at 1009.412 kb on + strand, within SMa1780at 1009.412 kb on + strand, within SMa1780at 1009.412 kb on + strand, within SMa1780at 1009.412 kb on + strand, within SMa1780at 1009.412 kb on + strand, within SMa1780at 1009.413 kb on - strand, within SMa1780at 1009.675 kb on - strand, within SMa1780at 1009.693 kb on + strand, within SMa1780at 1009.791 kb on + strandat 1009.791 kb on + strandat 1009.792 kb on - strandat 1009.792 kb on - strandat 1009.801 kb on + strandat 1009.802 kb on - strandat 1009.803 kb on + strandat 1009.803 kb on + strandat 1009.933 kb on + strandat 1009.934 kb on - strandat 1010.160 kb on + strand, within SMa1782at 1010.436 kb on - strand, within SMa1782at 1010.459 kb on + strand, within SMa1782at 1010.533 kb on + strand, within SMa1782at 1010.533 kb on + strand, within SMa1782at 1010.570 kb on + strand, within SMa1782at 1010.571 kb on - strand, within SMa1782at 1010.571 kb on - strand, within SMa1782at 1010.650 kb on + strand, within SMa1782at 1010.651 kb on - strand, within SMa1782at 1010.765 kb on + strandat 1010.766 kb on - strandat 1010.766 kb on - strandat 1010.766 kb on - strandat 1010.877 kb on + strandat 1011.073 kb on + strandat 1011.110 kb on + strandat 1011.111 kb on - strandat 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.175 kb on + strand, within SMa1784at 1011.176 kb on - strand, within SMa1784at 1011.176 kb on - strand, within SMa1784at 1011.176 kb on - strand, within SMa1784at 1011.176 kb on - strand, within SMa1784at 1011.176 kb on - strand, within SMa1784at 1011.683 kb on - strand, within SMa1787

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
1,008,904 + -0.2
1,008,905 - -0.7
1,008,905 - +0.6
1,009,179 + SMa1779 0.70 -0.1
1,009,230 + SMa1779 0.82 +0.1
1,009,282 + +0.3
1,009,282 + +0.7
1,009,282 + +1.8
1,009,282 + +0.2
1,009,282 + +0.2
1,009,283 - -0.9
1,009,283 - +1.1
1,009,283 - -0.5
1,009,283 - +0.9
1,009,283 - -0.4
1,009,286 + +0.1
1,009,320 + -0.5
1,009,321 - -1.2
1,009,324 + +0.0
1,009,324 + +0.1
1,009,324 + -0.1
1,009,325 - +1.1
1,009,330 - -0.8
1,009,395 + SMa1780 0.17 -0.3
1,009,404 + SMa1780 0.19 -1.5
1,009,404 + SMa1780 0.19 +1.1
1,009,404 + SMa1780 0.19 +1.7
1,009,405 - SMa1780 0.19 -0.7
1,009,405 - SMa1780 0.19 -0.9
1,009,412 + SMa1780 0.21 -1.9
1,009,412 + SMa1780 0.21 -0.2
1,009,412 + SMa1780 0.21 +0.4
1,009,412 + SMa1780 0.21 -1.0
1,009,412 + SMa1780 0.21 +0.4
1,009,413 - SMa1780 0.21 +1.0
1,009,675 - SMa1780 0.80 -0.0
1,009,693 + SMa1780 0.84 +1.3
1,009,791 + +2.3
1,009,791 + -0.4
1,009,792 - -0.0
1,009,792 - -2.2
1,009,801 + -0.2
1,009,802 - +2.2
1,009,803 + +0.2
1,009,803 + +0.9
1,009,933 + -1.2
1,009,934 - +0.4
1,010,160 + SMa1782 0.34 +0.1
1,010,436 - SMa1782 0.65 -0.0
1,010,459 + SMa1782 0.68 +0.2
1,010,533 + SMa1782 0.76 +0.7
1,010,533 + SMa1782 0.76 -0.6
1,010,570 + SMa1782 0.80 +0.2
1,010,571 - SMa1782 0.80 +1.6
1,010,571 - SMa1782 0.80 +0.4
1,010,650 + SMa1782 0.89 -0.6
1,010,651 - SMa1782 0.89 +2.4
1,010,765 + +0.0
1,010,766 - -0.4
1,010,766 - -0.3
1,010,766 - -0.2
1,010,877 + +0.1
1,011,073 + -0.0
1,011,110 + -1.2
1,011,111 - +1.2
1,011,175 + SMa1784 0.13 -0.0
1,011,175 + SMa1784 0.13 +1.3
1,011,175 + SMa1784 0.13 -0.7
1,011,175 + SMa1784 0.13 +0.1
1,011,175 + SMa1784 0.13 +0.1
1,011,175 + SMa1784 0.13 -0.7
1,011,175 + SMa1784 0.13 -0.2
1,011,176 - SMa1784 0.14 +0.1
1,011,176 - SMa1784 0.14 +0.5
1,011,176 - SMa1784 0.14 +0.3
1,011,176 - SMa1784 0.14 +0.3
1,011,176 - SMa1784 0.14 -0.3
1,011,683 - SMa1787 0.40 -0.1

Or see this region's nucleotide sequence