Strain Fitness in Sinorhizobium meliloti 1021 around SMa1750

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1749 and SMa1750 are separated by 552 nucleotidesSMa1750 and SMa1751 are separated by 382 nucleotides SMa1749: SMa1749 - transcriptional regulator, at 991,460 to 992,359 SMa1749 SMa1750: SMa1750 - hypothetical protein, at 992,912 to 994,291 SMa1750 SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456 SMa1751 Position (kb) 992 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 991.970 kb on + strand, within SMa1749at 991.970 kb on + strand, within SMa1749at 991.971 kb on - strand, within SMa1749at 992.033 kb on - strand, within SMa1749at 992.048 kb on - strand, within SMa1749at 992.063 kb on - strand, within SMa1749at 992.063 kb on - strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.110 kb on - strand, within SMa1749at 992.145 kb on - strandat 992.145 kb on - strand, within SMa1749at 992.226 kb on + strand, within SMa1749at 992.229 kb on + strand, within SMa1749at 992.230 kb on - strand, within SMa1749at 992.230 kb on - strand, within SMa1749at 992.364 kb on - strandat 992.454 kb on + strandat 992.454 kb on + strandat 992.454 kb on + strandat 992.504 kb on + strandat 992.505 kb on - strandat 992.822 kb on - strandat 992.861 kb on + strandat 992.861 kb on + strandat 992.863 kb on + strandat 992.864 kb on - strandat 992.864 kb on - strandat 992.887 kb on + strandat 992.888 kb on - strandat 992.912 kb on - strandat 992.994 kb on + strandat 992.995 kb on - strandat 993.162 kb on + strandat 993.162 kb on + strand, within SMa1750at 993.162 kb on + strand, within SMa1750at 993.162 kb on + strand, within SMa1750at 993.162 kb on + strand, within SMa1750at 993.163 kb on - strand, within SMa1750at 993.163 kb on - strand, within SMa1750at 993.169 kb on + strand, within SMa1750at 993.389 kb on - strand, within SMa1750at 993.446 kb on + strand, within SMa1750at 993.559 kb on + strand, within SMa1750at 993.591 kb on + strand, within SMa1750at 993.592 kb on - strand, within SMa1750at 993.666 kb on - strand, within SMa1750at 993.680 kb on + strand, within SMa1750at 993.680 kb on + strand, within SMa1750at 993.681 kb on - strand, within SMa1750at 993.681 kb on - strand, within SMa1750at 993.690 kb on - strand, within SMa1750at 993.769 kb on + strand, within SMa1750at 993.769 kb on + strand, within SMa1750at 993.804 kb on + strand, within SMa1750at 993.805 kb on - strand, within SMa1750at 993.832 kb on - strand, within SMa1750at 993.840 kb on + strand, within SMa1750at 994.357 kb on + strandat 994.456 kb on - strandat 994.456 kb on - strandat 994.503 kb on + strandat 994.504 kb on - strandat 994.641 kb on - strandat 994.676 kb on - strandat 994.790 kb on + strand, within SMa1751at 994.790 kb on + strand, within SMa1751at 994.794 kb on - strand, within SMa1751at 994.794 kb on - strand, within SMa1751at 994.899 kb on + strand, within SMa1751at 994.899 kb on + strand, within SMa1751at 994.899 kb on + strand, within SMa1751at 994.899 kb on + strand, within SMa1751at 995.071 kb on + strand, within SMa1751at 995.072 kb on - strand, within SMa1751at 995.072 kb on - strand, within SMa1751at 995.152 kb on - strand, within SMa1751at 995.152 kb on - strand, within SMa1751at 995.206 kb on - strand, within SMa1751at 995.206 kb on - strand, within SMa1751

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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991,970 + SMa1749 0.57 -0.6
991,970 + SMa1749 0.57 +1.1
991,971 - SMa1749 0.57 +0.9
992,033 - SMa1749 0.64 +1.3
992,048 - SMa1749 0.65 +0.1
992,063 - SMa1749 0.67 +0.3
992,063 - SMa1749 0.67 +0.9
992,109 + SMa1749 0.72 +0.2
992,109 + SMa1749 0.72 +1.4
992,109 + SMa1749 0.72 +1.1
992,110 - SMa1749 0.72 +4.1
992,145 - -1.5
992,145 - SMa1749 0.76 +0.1
992,226 + SMa1749 0.85 +0.6
992,229 + SMa1749 0.85 -1.0
992,230 - SMa1749 0.86 +0.3
992,230 - SMa1749 0.86 -2.2
992,364 - +0.2
992,454 + +2.6
992,454 + -0.8
992,454 + +0.6
992,504 + +0.6
992,505 - +0.6
992,822 - -0.3
992,861 + -0.2
992,861 + -2.1
992,863 + +1.1
992,864 - +0.3
992,864 - +1.1
992,887 + -1.3
992,888 - +0.2
992,912 - -0.0
992,994 + -0.0
992,995 - +1.0
993,162 + +2.1
993,162 + SMa1750 0.18 +0.2
993,162 + SMa1750 0.18 +0.0
993,162 + SMa1750 0.18 -0.4
993,162 + SMa1750 0.18 +1.1
993,163 - SMa1750 0.18 +1.2
993,163 - SMa1750 0.18 -1.4
993,169 + SMa1750 0.19 -0.6
993,389 - SMa1750 0.35 -0.9
993,446 + SMa1750 0.39 -3.0
993,559 + SMa1750 0.47 +1.3
993,591 + SMa1750 0.49 +2.1
993,592 - SMa1750 0.49 +0.4
993,666 - SMa1750 0.55 -0.4
993,680 + SMa1750 0.56 +0.6
993,680 + SMa1750 0.56 +0.6
993,681 - SMa1750 0.56 +0.5
993,681 - SMa1750 0.56 +0.7
993,690 - SMa1750 0.56 +1.1
993,769 + SMa1750 0.62 +0.8
993,769 + SMa1750 0.62 -1.1
993,804 + SMa1750 0.65 -0.2
993,805 - SMa1750 0.65 -0.4
993,832 - SMa1750 0.67 +0.7
993,840 + SMa1750 0.67 +0.3
994,357 + -2.0
994,456 - +1.8
994,456 - -0.6
994,503 + -0.1
994,504 - +0.1
994,641 - +0.3
994,676 - -0.0
994,790 + SMa1751 0.15 +0.2
994,790 + SMa1751 0.15 +0.0
994,794 - SMa1751 0.15 -1.7
994,794 - SMa1751 0.15 +1.1
994,899 + SMa1751 0.29 +0.3
994,899 + SMa1751 0.29 +2.3
994,899 + SMa1751 0.29 +0.1
994,899 + SMa1751 0.29 +0.6
995,071 + SMa1751 0.51 +0.0
995,072 - SMa1751 0.51 -1.4
995,072 - SMa1751 0.51 -1.5
995,152 - SMa1751 0.61 -0.0
995,152 - SMa1751 0.61 -0.4
995,206 - SMa1751 0.68 +1.4
995,206 - SMa1751 0.68 +0.5

Or see this region's nucleotide sequence