Strain Fitness in Sinorhizobium meliloti 1021 around SMa1735

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1734 and SMa1735 are separated by 439 nucleotidesSMa1735 and SMa1736 are separated by 43 nucleotides SMa1734: SMa1734 - hypothetical protein, at 978,754 to 979,836 SMa1734 SMa1735: SMa1735 - oxidoreductase, at 980,276 to 981,340 SMa1735 SMa1736: SMa1736 - LysR family transcriptional regulator, at 981,384 to 982,265 SMa1736 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2 3at 979.314 kb on - strand, within SMa1734at 979.325 kb on + strand, within SMa1734at 979.325 kb on + strand, within SMa1734at 979.325 kb on + strand, within SMa1734at 979.326 kb on - strand, within SMa1734at 979.484 kb on + strand, within SMa1734at 979.497 kb on - strand, within SMa1734at 979.497 kb on - strand, within SMa1734at 979.530 kb on - strand, within SMa1734at 979.548 kb on + strand, within SMa1734at 979.549 kb on - strand, within SMa1734at 979.594 kb on - strand, within SMa1734at 979.599 kb on - strand, within SMa1734at 979.602 kb on + strand, within SMa1734at 979.603 kb on - strand, within SMa1734at 979.805 kb on + strandat 979.805 kb on + strandat 979.805 kb on + strandat 979.805 kb on + strandat 979.806 kb on - strandat 979.809 kb on + strandat 979.810 kb on - strandat 979.810 kb on - strandat 979.839 kb on + strandat 979.840 kb on - strandat 979.939 kb on + strandat 980.106 kb on + strandat 980.107 kb on - strandat 980.114 kb on + strandat 980.243 kb on + strandat 980.243 kb on + strandat 980.243 kb on + strandat 980.243 kb on + strandat 980.243 kb on + strandat 980.244 kb on - strandat 980.244 kb on - strandat 980.244 kb on - strandat 980.244 kb on - strandat 980.246 kb on - strandat 980.246 kb on - strandat 980.246 kb on - strandat 980.275 kb on + strandat 980.275 kb on + strandat 980.275 kb on + strandat 980.276 kb on - strandat 980.281 kb on + strandat 980.334 kb on - strandat 980.389 kb on + strand, within SMa1735at 980.450 kb on + strand, within SMa1735at 980.450 kb on + strand, within SMa1735at 980.450 kb on + strand, within SMa1735at 980.451 kb on - strand, within SMa1735at 980.452 kb on + strand, within SMa1735at 980.452 kb on + strand, within SMa1735at 980.452 kb on + strand, within SMa1735at 980.453 kb on - strand, within SMa1735at 980.453 kb on - strand, within SMa1735at 980.453 kb on - strand, within SMa1735at 980.605 kb on + strand, within SMa1735at 980.605 kb on + strand, within SMa1735at 980.606 kb on - strand, within SMa1735at 980.629 kb on - strand, within SMa1735at 980.629 kb on - strand, within SMa1735at 980.629 kb on - strand, within SMa1735at 980.629 kb on - strand, within SMa1735at 980.645 kb on + strand, within SMa1735at 980.706 kb on + strand, within SMa1735at 980.723 kb on + strand, within SMa1735at 980.723 kb on + strand, within SMa1735at 980.723 kb on + strandat 980.723 kb on + strand, within SMa1735at 980.723 kb on + strand, within SMa1735at 980.723 kb on + strand, within SMa1735at 980.791 kb on + strand, within SMa1735at 980.791 kb on + strand, within SMa1735at 980.792 kb on - strand, within SMa1735at 980.792 kb on - strand, within SMa1735at 980.848 kb on + strand, within SMa1735at 980.848 kb on + strand, within SMa1735at 980.848 kb on + strand, within SMa1735at 980.848 kb on + strand, within SMa1735at 980.848 kb on + strand, within SMa1735at 980.849 kb on - strand, within SMa1735at 980.849 kb on - strand, within SMa1735at 980.904 kb on + strand, within SMa1735at 980.905 kb on - strand, within SMa1735at 980.905 kb on - strand, within SMa1735at 980.905 kb on - strand, within SMa1735at 980.916 kb on + strand, within SMa1735at 980.916 kb on + strand, within SMa1735at 980.917 kb on - strand, within SMa1735at 981.027 kb on + strand, within SMa1735at 981.028 kb on - strand, within SMa1735at 981.030 kb on - strand, within SMa1735at 981.079 kb on - strand, within SMa1735at 981.090 kb on + strandat 981.091 kb on - strand, within SMa1735at 981.411 kb on - strandat 981.497 kb on - strand, within SMa1736at 981.497 kb on - strand, within SMa1736at 981.563 kb on - strand, within SMa1736at 981.563 kb on - strand, within SMa1736at 981.586 kb on + strand, within SMa1736at 981.612 kb on - strand, within SMa1736at 981.635 kb on - strand, within SMa1736at 981.706 kb on + strand, within SMa1736at 981.720 kb on - strand, within SMa1736at 981.722 kb on - strand, within SMa1736at 981.765 kb on + strand, within SMa1736at 982.231 kb on - strandat 982.290 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
979,314 - SMa1734 0.52 +0.1
979,325 + SMa1734 0.53 +1.1
979,325 + SMa1734 0.53 +0.8
979,325 + SMa1734 0.53 +0.5
979,326 - SMa1734 0.53 +0.6
979,484 + SMa1734 0.67 +0.6
979,497 - SMa1734 0.69 +0.4
979,497 - SMa1734 0.69 +0.9
979,530 - SMa1734 0.72 +1.1
979,548 + SMa1734 0.73 +0.8
979,549 - SMa1734 0.73 +0.6
979,594 - SMa1734 0.78 -0.6
979,599 - SMa1734 0.78 -0.3
979,602 + SMa1734 0.78 +0.8
979,603 - SMa1734 0.78 +0.8
979,805 + +0.3
979,805 + +0.6
979,805 + +0.3
979,805 + +0.7
979,806 - -0.2
979,809 + -1.7
979,810 - -0.0
979,810 - -0.6
979,839 + +0.2
979,840 - +1.0
979,939 + -0.0
980,106 + -0.1
980,107 - +0.2
980,114 + +0.6
980,243 + +0.8
980,243 + +0.6
980,243 + +0.6
980,243 + -1.7
980,243 + -0.4
980,244 - +0.2
980,244 - +0.0
980,244 - +0.1
980,244 - -0.9
980,246 - +0.7
980,246 - +3.7
980,246 - +2.4
980,275 + +1.2
980,275 + +0.1
980,275 + +3.1
980,276 - -0.1
980,281 + +3.7
980,334 - -1.1
980,389 + SMa1735 0.11 +0.9
980,450 + SMa1735 0.16 -0.1
980,450 + SMa1735 0.16 -0.5
980,450 + SMa1735 0.16 -0.8
980,451 - SMa1735 0.16 +0.3
980,452 + SMa1735 0.17 +0.0
980,452 + SMa1735 0.17 +0.3
980,452 + SMa1735 0.17 -0.2
980,453 - SMa1735 0.17 +2.2
980,453 - SMa1735 0.17 +0.8
980,453 - SMa1735 0.17 -1.1
980,605 + SMa1735 0.31 -0.2
980,605 + SMa1735 0.31 -0.1
980,606 - SMa1735 0.31 +0.1
980,629 - SMa1735 0.33 +0.1
980,629 - SMa1735 0.33 +1.6
980,629 - SMa1735 0.33 +0.7
980,629 - SMa1735 0.33 +1.1
980,645 + SMa1735 0.35 +1.1
980,706 + SMa1735 0.40 +0.7
980,723 + SMa1735 0.42 +0.1
980,723 + SMa1735 0.42 -0.7
980,723 + +0.3
980,723 + SMa1735 0.42 -0.2
980,723 + SMa1735 0.42 -2.2
980,723 + SMa1735 0.42 +0.2
980,791 + SMa1735 0.48 -0.5
980,791 + SMa1735 0.48 +0.7
980,792 - SMa1735 0.48 -0.2
980,792 - SMa1735 0.48 +0.6
980,848 + SMa1735 0.54 -0.1
980,848 + SMa1735 0.54 +0.2
980,848 + SMa1735 0.54 +0.6
980,848 + SMa1735 0.54 -0.8
980,848 + SMa1735 0.54 +0.6
980,849 - SMa1735 0.54 +0.3
980,849 - SMa1735 0.54 -0.5
980,904 + SMa1735 0.59 +1.2
980,905 - SMa1735 0.59 +0.9
980,905 - SMa1735 0.59 +0.8
980,905 - SMa1735 0.59 -2.6
980,916 + SMa1735 0.60 +0.1
980,916 + SMa1735 0.60 -1.7
980,917 - SMa1735 0.60 +0.6
981,027 + SMa1735 0.71 +1.2
981,028 - SMa1735 0.71 -0.0
981,030 - SMa1735 0.71 +2.1
981,079 - SMa1735 0.75 +0.0
981,090 + +0.7
981,091 - SMa1735 0.77 +0.9
981,411 - -2.2
981,497 - SMa1736 0.13 +0.3
981,497 - SMa1736 0.13 -0.1
981,563 - SMa1736 0.20 +0.8
981,563 - SMa1736 0.20 +0.4
981,586 + SMa1736 0.23 -0.3
981,612 - SMa1736 0.26 +0.4
981,635 - SMa1736 0.28 +0.1
981,706 + SMa1736 0.37 +0.1
981,720 - SMa1736 0.38 +0.1
981,722 - SMa1736 0.38 -1.5
981,765 + SMa1736 0.43 +1.1
982,231 - +0.6
982,290 - -0.1

Or see this region's nucleotide sequence