Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1604 and SMa1606 overlap by 4 nucleotides SMa1606 and SMa1608 are separated by 450 nucleotides SMa1608 and SMa1610 overlap by 1 nucleotides
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
SMa1606: SMa1606 - hypothetical protein, at 895,919 to 896,896
SMa1606
SMa1608: SMa1608 - hypothetical protein, at 897,347 to 897,643
SMa1608
SMa1610: SMa1610 - transposase, at 897,643 to 897,906
SMa1610
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1
2 at 894.942 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.060 kb on - strand, within SMa1604 at 895.128 kb on + strand, within SMa1604 at 895.154 kb on + strand, within SMa1604 at 895.378 kb on - strand, within SMa1604 at 895.578 kb on + strand, within SMa1604 at 895.585 kb on - strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.643 kb on + strand, within SMa1604 at 895.855 kb on - strand at 896.108 kb on - strand, within SMa1606 at 896.229 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.504 kb on - strand, within SMa1606 at 896.509 kb on + strand, within SMa1606 at 896.549 kb on + strand, within SMa1606 at 896.550 kb on - strand, within SMa1606 at 896.680 kb on + strand, within SMa1606 at 896.795 kb on + strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.843 kb on - strand at 896.901 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand at 897.002 kb on + strand at 897.002 kb on + strand at 897.019 kb on + strand at 897.040 kb on - strand at 897.307 kb on + strand at 897.307 kb on + strand at 897.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 894,942 - SMa1604 0.10 +0.6 894,970 - SMa1604 0.13 -0.4 894,970 - SMa1604 0.13 +0.0 895,038 + SMa1604 0.19 +0.1 895,038 + SMa1604 0.19 +1.4 895,038 + SMa1604 0.19 +1.2 895,060 - SMa1604 0.21 +0.1 895,128 + SMa1604 0.27 +0.7 895,154 + SMa1604 0.30 +0.2 895,378 - SMa1604 0.50 -0.8 895,578 + SMa1604 0.68 +0.0 895,585 - SMa1604 0.69 -1.5 895,620 + SMa1604 0.72 +0.4 895,620 + SMa1604 0.72 +0.3 895,620 + SMa1604 0.72 -0.5 895,621 - SMa1604 0.72 -0.3 895,621 - SMa1604 0.72 +2.0 895,621 - SMa1604 0.72 +0.7 895,643 + SMa1604 0.74 +0.5 895,855 - -0.1 896,108 - SMa1606 0.19 +0.1 896,229 - SMa1606 0.32 +2.4 896,412 - SMa1606 0.50 -1.3 896,412 - SMa1606 0.50 +0.3 896,412 - SMa1606 0.50 +0.3 896,415 + SMa1606 0.51 -1.1 896,415 + SMa1606 0.51 +0.1 896,415 + SMa1606 0.51 +1.5 896,503 + SMa1606 0.60 +0.4 896,503 + SMa1606 0.60 +0.2 896,504 - SMa1606 0.60 -0.7 896,509 + SMa1606 0.60 -0.8 896,549 + SMa1606 0.64 +0.7 896,550 - SMa1606 0.65 +0.7 896,680 + SMa1606 0.78 -0.0 896,795 + SMa1606 0.90 -0.2 896,796 - SMa1606 0.90 +0.7 896,796 - SMa1606 0.90 +0.9 896,843 - +0.2 896,901 + -1.7 896,902 - +0.6 896,902 - -0.8 897,002 + +0.7 897,002 + +0.2 897,019 + +0.8 897,040 - -0.7 897,307 + -2.5 897,307 + -0.7 897,308 - +0.1
Or see this region's nucleotide sequence