Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1586 and SMa1587 are separated by 305 nucleotides
SMa1586: SMa1586 - SyrB2 regulator, at 879,859 to 880,314
SMa1586
SMa1587: SMa1587 - EglC endo-1,3-1,4-BETA-glycanase, at 880,620 to 882,017
SMa1587
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 879.650 kb on + strand at 879.651 kb on - strand at 879.651 kb on - strand at 879.689 kb on + strand at 879.689 kb on + strand at 879.696 kb on + strand at 879.697 kb on - strand at 879.714 kb on + strand at 879.715 kb on - strand at 880.018 kb on + strand, within SMa1586 at 880.019 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.041 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.151 kb on + strand, within SMa1586 at 880.239 kb on + strand, within SMa1586 at 880.330 kb on + strand at 880.330 kb on + strand at 880.331 kb on - strand at 880.335 kb on - strand at 880.335 kb on - strand at 880.453 kb on + strand at 880.454 kb on - strand at 880.454 kb on - strand at 880.465 kb on - strand at 880.498 kb on + strand at 880.499 kb on - strand at 880.499 kb on - strand at 880.671 kb on - strand at 880.671 kb on - strand at 880.676 kb on + strand at 880.769 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.798 kb on - strand, within SMa1587 at 880.875 kb on + strand, within SMa1587 at 880.876 kb on - strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.941 kb on - strand, within SMa1587 at 881.120 kb on + strand, within SMa1587 at 881.121 kb on - strand, within SMa1587 at 881.196 kb on + strand, within SMa1587 at 881.197 kb on - strand, within SMa1587 at 881.213 kb on + strand, within SMa1587 at 881.214 kb on - strand, within SMa1587 at 881.403 kb on + strand, within SMa1587 at 881.404 kb on - strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.527 kb on - strand, within SMa1587 at 881.527 kb on - strand, within SMa1587 at 881.528 kb on + strand, within SMa1587 at 881.550 kb on + strand, within SMa1587 at 881.551 kb on - strand, within SMa1587 at 881.571 kb on + strand, within SMa1587 at 881.702 kb on + strand, within SMa1587 at 881.777 kb on + strand, within SMa1587 at 881.778 kb on - strand, within SMa1587 at 881.796 kb on + strand, within SMa1587 at 881.796 kb on + strand, within SMa1587 at 881.797 kb on - strand, within SMa1587 at 881.892 kb on + strand at 881.892 kb on + strand at 881.892 kb on + strand at 881.893 kb on - strand at 881.893 kb on - strand at 881.893 kb on - strand at 881.989 kb on - strand at 882.126 kb on - strand at 882.308 kb on + strand at 882.353 kb on - strand at 882.375 kb on - strand at 882.383 kb on + strand at 882.395 kb on + strand at 882.463 kb on - strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.524 kb on - strand at 882.524 kb on - strand at 882.528 kb on - strand at 882.547 kb on + strand at 882.632 kb on + strand at 882.632 kb on + strand at 882.651 kb on + strand at 882.651 kb on + strand at 882.652 kb on - strand at 882.652 kb on - strand at 882.685 kb on + strand at 882.712 kb on + strand at 882.877 kb on + strand at 882.878 kb on - strand at 882.912 kb on + strand at 882.912 kb on + strand at 882.913 kb on - strand at 882.968 kb on + strand at 882.968 kb on + strand at 882.969 kb on - strand at 882.969 kb on - strand at 882.969 kb on - strand at 883.015 kb on + strand at 883.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 879,650 + -0.3 879,651 - -0.1 879,651 - +0.4 879,689 + -0.2 879,689 + -0.6 879,696 + +0.5 879,697 - +0.2 879,714 + +0.0 879,715 - +0.5 880,018 + SMa1586 0.35 +0.0 880,019 - SMa1586 0.35 -0.6 880,038 - SMa1586 0.39 +0.1 880,038 - SMa1586 0.39 +1.1 880,041 - SMa1586 0.40 -0.5 880,150 - SMa1586 0.64 -0.0 880,150 - SMa1586 0.64 -0.1 880,151 + SMa1586 0.64 -0.7 880,239 + SMa1586 0.83 +0.7 880,330 + +1.4 880,330 + +1.6 880,331 - -2.0 880,335 - +0.1 880,335 - -0.4 880,453 + -0.1 880,454 - +0.7 880,454 - +0.5 880,465 - +0.4 880,498 + +0.9 880,499 - -0.9 880,499 - +0.1 880,671 - +1.8 880,671 - +0.4 880,676 + -0.1 880,769 + SMa1587 0.11 -0.9 880,797 + SMa1587 0.13 +0.7 880,797 + SMa1587 0.13 +1.3 880,797 + SMa1587 0.13 +0.9 880,797 + SMa1587 0.13 +0.4 880,798 - SMa1587 0.13 +0.4 880,875 + SMa1587 0.18 +1.1 880,876 - SMa1587 0.18 -0.5 880,940 + SMa1587 0.23 -1.3 880,940 + SMa1587 0.23 +0.6 880,941 - SMa1587 0.23 +0.3 881,120 + SMa1587 0.36 +0.5 881,121 - SMa1587 0.36 +1.0 881,196 + SMa1587 0.41 -0.0 881,197 - SMa1587 0.41 -0.9 881,213 + SMa1587 0.42 +0.8 881,214 - SMa1587 0.42 +2.1 881,403 + SMa1587 0.56 +0.2 881,404 - SMa1587 0.56 +0.6 881,526 + SMa1587 0.65 +0.9 881,526 + SMa1587 0.65 +0.2 881,526 + SMa1587 0.65 +0.6 881,527 - SMa1587 0.65 -1.1 881,527 - SMa1587 0.65 +0.3 881,528 + SMa1587 0.65 +0.1 881,550 + SMa1587 0.67 -0.0 881,551 - SMa1587 0.67 -0.4 881,571 + SMa1587 0.68 +0.4 881,702 + SMa1587 0.77 +0.7 881,777 + SMa1587 0.83 +0.6 881,778 - SMa1587 0.83 +0.3 881,796 + SMa1587 0.84 -1.5 881,796 + SMa1587 0.84 +0.8 881,797 - SMa1587 0.84 +0.9 881,892 + +0.4 881,892 + -1.5 881,892 + -0.6 881,893 - +0.1 881,893 - -0.7 881,893 - +0.9 881,989 - +0.6 882,126 - +1.0 882,308 + -0.7 882,353 - +0.7 882,375 - -2.5 882,383 + -0.5 882,395 + -0.0 882,463 - +0.4 882,523 + +0.1 882,523 + +0.3 882,523 + -0.3 882,523 + +0.2 882,523 + +5.6 882,523 + -0.6 882,524 - -0.4 882,524 - -0.9 882,528 - +0.2 882,547 + +0.9 882,632 + +0.6 882,632 + +0.4 882,651 + +0.6 882,651 + +0.9 882,652 - +0.5 882,652 - +1.9 882,685 + +0.1 882,712 + +0.1 882,877 + -0.1 882,878 - -1.7 882,912 + +0.8 882,912 + -2.3 882,913 - -1.2 882,968 + +0.6 882,968 + +0.9 882,969 - +1.1 882,969 - +0.5 882,969 - -1.3 883,015 + +0.3 883,016 - -0.2
Or see this region's nucleotide sequence