Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1523 and SMa1525 are separated by 29 nucleotides SMa1525 and SMa1526 are separated by 3 nucleotides SMa1526 and SMa1529 are separated by 18 nucleotides
SMa1523: SMa1523 - NuoG2 NADH I chain G 2, at 838,689 to 841,250
SMa1523
SMa1525: SMa1525 - NuoF2 NADH I chain F, at 841,280 to 842,545
SMa1525
SMa1526: SMa1526 - NuoE2 NADH I chain E, at 842,549 to 843,055
SMa1526
SMa1529: SMa1529 - NuoD2 NADH I chain D, at 843,074 to 844,288
SMa1529
Position (kb) 841
842
843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 840.280 kb on + strand, within SMa1523 at 840.280 kb on + strand, within SMa1523 at 840.622 kb on + strand, within SMa1523 at 840.623 kb on - strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 841.026 kb on - strand at 841.044 kb on - strand at 841.251 kb on - strand at 841.251 kb on - strand at 841.251 kb on - strand at 841.769 kb on + strand, within SMa1525 at 841.770 kb on - strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.824 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.891 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.039 kb on - strand, within SMa1525 at 842.040 kb on + strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.153 kb on + strand, within SMa1525 at 842.166 kb on + strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.187 kb on + strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.211 kb on + strand, within SMa1525 at 842.211 kb on + strand, within SMa1525 at 842.316 kb on + strand, within SMa1525 at 842.317 kb on - strand, within SMa1525 at 842.317 kb on - strand, within SMa1525 at 842.434 kb on + strand at 842.434 kb on + strand at 842.550 kb on + strand at 842.550 kb on + strand at 842.675 kb on - strand, within SMa1526 at 842.874 kb on + strand, within SMa1526 at 842.892 kb on + strand, within SMa1526 at 843.075 kb on + strand at 843.138 kb on + strand at 843.139 kb on - strand at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.277 kb on - strand, within SMa1529 at 843.391 kb on + strand, within SMa1529 at 843.538 kb on - strand, within SMa1529 at 843.538 kb on - strand, within SMa1529
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 840,280 + SMa1523 0.62 -1.8 840,280 + SMa1523 0.62 +0.1 840,622 + SMa1523 0.75 +0.4 840,623 - SMa1523 0.75 +0.9 840,750 + SMa1523 0.80 -0.3 840,750 + SMa1523 0.80 -0.0 840,750 + SMa1523 0.80 +0.5 841,026 - +1.0 841,044 - +0.2 841,251 - -0.4 841,251 - +1.6 841,251 - -1.2 841,769 + SMa1525 0.39 +1.8 841,770 - SMa1525 0.39 +0.2 841,788 + SMa1525 0.40 +0.2 841,788 + SMa1525 0.40 +0.0 841,824 + SMa1525 0.43 -0.9 841,856 + SMa1525 0.45 -0.2 841,856 + SMa1525 0.45 -0.5 841,891 + SMa1525 0.48 -0.0 842,038 + SMa1525 0.60 +1.9 842,038 + SMa1525 0.60 -0.1 842,039 - SMa1525 0.60 +0.3 842,040 + SMa1525 0.60 -0.2 842,041 - SMa1525 0.60 +1.5 842,041 - SMa1525 0.60 +1.1 842,153 + SMa1525 0.69 -2.1 842,166 + SMa1525 0.70 +0.4 842,167 - SMa1525 0.70 -0.1 842,167 - SMa1525 0.70 -0.4 842,182 - SMa1525 0.71 +0.3 842,182 - SMa1525 0.71 +1.2 842,187 + SMa1525 0.72 +0.5 842,188 - SMa1525 0.72 +0.5 842,188 - SMa1525 0.72 -1.9 842,188 - SMa1525 0.72 -2.3 842,188 - SMa1525 0.72 -1.2 842,211 + SMa1525 0.74 +0.3 842,211 + SMa1525 0.74 +1.1 842,316 + SMa1525 0.82 +0.4 842,317 - SMa1525 0.82 +0.1 842,317 - SMa1525 0.82 -0.1 842,434 + -0.4 842,434 + +1.4 842,550 + -1.5 842,550 + +0.1 842,675 - SMa1526 0.25 -0.4 842,874 + SMa1526 0.64 -0.2 842,892 + SMa1526 0.68 -0.9 843,075 + -2.1 843,138 + -0.5 843,139 - +0.7 843,238 - SMa1529 0.13 +0.1 843,238 - SMa1529 0.13 +0.2 843,238 - SMa1529 0.13 +0.2 843,238 - SMa1529 0.13 -1.3 843,277 - SMa1529 0.17 -1.3 843,391 + SMa1529 0.26 -1.2 843,538 - SMa1529 0.38 +0.1 843,538 - SMa1529 0.38 -0.4
Or see this region's nucleotide sequence