Strain Fitness in Sinorhizobium meliloti 1021 around SMa1493

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1488 and SMa1491 overlap by 4 nucleotidesSMa1491 and SMa1493 are separated by 159 nucleotidesSMa1493 and SMa1494 are separated by 86 nucleotidesSMa1494 and SMa1495 are separated by 428 nucleotides SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092 SMa1488 SMa1491: SMa1491 - Oxidoreductase, at 822,089 to 822,553 SMa1491 SMa1493: SMa1493 - LysR family transcriptional regulator, at 822,713 to 823,636 SMa1493 SMa1494: SMa1494 - hypothetical protein, at 823,723 to 824,163 SMa1494 SMa1495: SMa1495 - aminotransferase, at 824,592 to 825,704 SMa1495 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2 3at 821.746 kb on + strand, within SMa1488at 821.746 kb on + strand, within SMa1488at 821.835 kb on + strand, within SMa1488at 821.835 kb on + strand, within SMa1488at 821.836 kb on - strand, within SMa1488at 821.836 kb on - strand, within SMa1488at 822.071 kb on + strandat 822.072 kb on - strandat 822.072 kb on - strandat 822.148 kb on + strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.151 kb on - strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.222 kb on - strand, within SMa1491at 822.302 kb on + strand, within SMa1491at 822.450 kb on + strand, within SMa1491at 822.450 kb on + strand, within SMa1491at 822.451 kb on - strand, within SMa1491at 822.529 kb on + strandat 822.529 kb on + strandat 822.637 kb on + strandat 822.668 kb on - strandat 822.708 kb on - strandat 822.708 kb on - strandat 822.712 kb on + strandat 822.712 kb on + strandat 822.712 kb on + strandat 822.713 kb on - strandat 822.802 kb on - strandat 822.945 kb on + strand, within SMa1493at 822.946 kb on - strand, within SMa1493at 822.946 kb on - strand, within SMa1493at 822.967 kb on + strand, within SMa1493at 823.071 kb on - strand, within SMa1493at 823.233 kb on - strand, within SMa1493at 823.322 kb on + strand, within SMa1493at 823.322 kb on + strand, within SMa1493at 823.323 kb on - strand, within SMa1493at 823.323 kb on - strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.397 kb on + strand, within SMa1493at 823.397 kb on + strand, within SMa1493at 823.398 kb on - strand, within SMa1493at 823.434 kb on + strand, within SMa1493at 823.435 kb on - strand, within SMa1493at 823.439 kb on + strand, within SMa1493at 823.439 kb on + strand, within SMa1493at 823.440 kb on - strand, within SMa1493at 823.440 kb on - strand, within SMa1493at 823.489 kb on - strand, within SMa1493at 823.527 kb on - strand, within SMa1493at 823.530 kb on - strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.536 kb on - strand, within SMa1493at 823.538 kb on + strand, within SMa1493at 823.538 kb on + strand, within SMa1493at 823.538 kb on + strand, within SMa1493at 823.634 kb on + strandat 823.634 kb on + strandat 823.634 kb on + strandat 823.635 kb on - strandat 823.635 kb on - strandat 823.635 kb on - strandat 823.635 kb on - strandat 823.642 kb on - strandat 823.846 kb on + strand, within SMa1494at 823.893 kb on - strand, within SMa1494at 823.963 kb on - strand, within SMa1494at 824.049 kb on + strand, within SMa1494at 824.085 kb on + strand, within SMa1494at 824.086 kb on - strand, within SMa1494at 824.107 kb on + strand, within SMa1494at 824.108 kb on - strand, within SMa1494at 824.109 kb on + strand, within SMa1494at 824.110 kb on - strand, within SMa1494at 824.145 kb on + strandat 824.215 kb on + strandat 824.216 kb on - strandat 824.229 kb on + strandat 824.229 kb on + strandat 824.230 kb on - strandat 824.230 kb on - strandat 824.281 kb on + strandat 824.282 kb on - strandat 824.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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821,746 + SMa1488 0.85 +0.7
821,746 + SMa1488 0.85 +0.1
821,835 + SMa1488 0.89 -0.6
821,835 + SMa1488 0.89 +0.3
821,836 - SMa1488 0.89 +0.0
821,836 - SMa1488 0.89 -0.0
822,071 + -0.0
822,072 - -1.8
822,072 - -0.6
822,148 + SMa1491 0.13 -0.6
822,149 - SMa1491 0.13 +0.2
822,149 - SMa1491 0.13 +0.7
822,149 - SMa1491 0.13 +0.7
822,149 - SMa1491 0.13 -2.5
822,149 - SMa1491 0.13 -1.2
822,149 - SMa1491 0.13 -0.9
822,150 + SMa1491 0.13 +2.0
822,150 + SMa1491 0.13 +1.0
822,150 + SMa1491 0.13 +0.2
822,151 - SMa1491 0.13 +0.2
822,221 + SMa1491 0.28 -0.4
822,221 + SMa1491 0.28 +0.6
822,221 + SMa1491 0.28 -0.3
822,222 - SMa1491 0.29 +0.2
822,302 + SMa1491 0.46 -0.6
822,450 + SMa1491 0.78 +0.6
822,450 + SMa1491 0.78 +0.1
822,451 - SMa1491 0.78 -1.0
822,529 + +0.3
822,529 + +0.1
822,637 + +0.2
822,668 - +0.7
822,708 - +0.4
822,708 - +1.8
822,712 + -0.0
822,712 + -1.3
822,712 + +0.3
822,713 - -0.8
822,802 - -0.3
822,945 + SMa1493 0.25 +0.8
822,946 - SMa1493 0.25 -0.4
822,946 - SMa1493 0.25 +0.4
822,967 + SMa1493 0.27 -0.2
823,071 - SMa1493 0.39 +0.4
823,233 - SMa1493 0.56 +0.7
823,322 + SMa1493 0.66 -0.7
823,322 + SMa1493 0.66 +0.7
823,323 - SMa1493 0.66 -0.4
823,323 - SMa1493 0.66 +0.3
823,326 + SMa1493 0.66 -1.8
823,326 + SMa1493 0.66 +1.7
823,326 + SMa1493 0.66 +0.2
823,326 + SMa1493 0.66 +0.4
823,327 - SMa1493 0.66 +0.1
823,327 - SMa1493 0.66 -0.0
823,327 - SMa1493 0.66 +0.9
823,327 - SMa1493 0.66 +0.5
823,327 - SMa1493 0.66 +0.3
823,397 + SMa1493 0.74 +2.3
823,397 + SMa1493 0.74 +1.3
823,398 - SMa1493 0.74 +0.8
823,434 + SMa1493 0.78 +0.0
823,435 - SMa1493 0.78 +0.1
823,439 + SMa1493 0.79 -0.6
823,439 + SMa1493 0.79 +0.1
823,440 - SMa1493 0.79 +0.1
823,440 - SMa1493 0.79 -0.7
823,489 - SMa1493 0.84 -0.9
823,527 - SMa1493 0.88 +0.2
823,530 - SMa1493 0.88 +1.1
823,535 + SMa1493 0.89 +0.6
823,535 + SMa1493 0.89 +0.3
823,535 + SMa1493 0.89 -2.1
823,536 - SMa1493 0.89 -0.6
823,538 + SMa1493 0.89 -0.9
823,538 + SMa1493 0.89 +3.4
823,538 + SMa1493 0.89 -0.5
823,634 + +0.3
823,634 + +0.4
823,634 + +0.6
823,635 - -1.7
823,635 - -0.1
823,635 - +0.4
823,635 - -0.5
823,642 - -0.3
823,846 + SMa1494 0.28 -0.0
823,893 - SMa1494 0.39 +0.7
823,963 - SMa1494 0.54 -1.3
824,049 + SMa1494 0.74 +1.0
824,085 + SMa1494 0.82 -0.1
824,086 - SMa1494 0.82 -1.3
824,107 + SMa1494 0.87 +0.9
824,108 - SMa1494 0.87 +0.3
824,109 + SMa1494 0.88 +0.2
824,110 - SMa1494 0.88 +0.6
824,145 + +0.3
824,215 + -1.6
824,216 - +0.0
824,229 + +0.3
824,229 + +0.2
824,230 - +1.4
824,230 - +0.3
824,281 + +0.1
824,282 - -0.1
824,309 - -0.5

Or see this region's nucleotide sequence