Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1179 and SMa1182 are separated by 25 nucleotides SMa1182 and SMa1183 overlap by 1 nucleotides
SMa1179: SMa1179 - NosR regulatory protein for N2O reductase, at 645,676 to 647,943
SMa1179
SMa1182: SMa1182 - nitrous-oxide reductase, at 647,969 to 649,888
SMa1182
SMa1183: SMa1183 - NosD nitrous oxidase accessory protein, at 649,888 to 651,249
SMa1183
Position (kb)
647
648
649
650 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 647.126 kb on - strand, within SMa1179 at 647.169 kb on + strand, within SMa1179 at 647.170 kb on - strand, within SMa1179 at 647.170 kb on - strand, within SMa1179 at 647.292 kb on - strand, within SMa1179 at 647.401 kb on + strand, within SMa1179 at 647.401 kb on + strand, within SMa1179 at 647.401 kb on + strand, within SMa1179 at 647.401 kb on + strand, within SMa1179 at 647.401 kb on + strand, within SMa1179 at 647.402 kb on - strand, within SMa1179 at 647.402 kb on - strand, within SMa1179 at 647.402 kb on - strand, within SMa1179 at 647.402 kb on - strand, within SMa1179 at 647.575 kb on + strand, within SMa1179 at 647.575 kb on + strand, within SMa1179 at 647.575 kb on + strand, within SMa1179 at 647.749 kb on + strand at 647.749 kb on + strand at 647.749 kb on + strand at 647.749 kb on + strand at 647.749 kb on + strand at 647.749 kb on + strand at 647.750 kb on - strand at 647.773 kb on + strand at 647.998 kb on + strand at 647.998 kb on + strand at 647.999 kb on - strand at 647.999 kb on - strand at 647.999 kb on - strand at 648.159 kb on - strand at 648.159 kb on - strand at 648.161 kb on + strand, within SMa1182 at 648.161 kb on + strand, within SMa1182 at 648.162 kb on - strand, within SMa1182 at 648.162 kb on - strand, within SMa1182 at 648.162 kb on - strand, within SMa1182 at 648.162 kb on - strand, within SMa1182 at 648.313 kb on - strand, within SMa1182 at 648.313 kb on - strand, within SMa1182 at 648.356 kb on + strand, within SMa1182 at 648.407 kb on + strand, within SMa1182 at 648.408 kb on - strand, within SMa1182 at 648.643 kb on + strand, within SMa1182 at 648.643 kb on + strand, within SMa1182 at 648.735 kb on - strand, within SMa1182 at 648.735 kb on - strand, within SMa1182 at 648.752 kb on + strand, within SMa1182 at 648.860 kb on + strand, within SMa1182 at 648.912 kb on - strand, within SMa1182 at 648.924 kb on + strand, within SMa1182 at 648.956 kb on - strand, within SMa1182 at 649.118 kb on + strand, within SMa1182 at 649.119 kb on - strand, within SMa1182 at 649.139 kb on + strand, within SMa1182 at 649.140 kb on - strand at 649.202 kb on + strand, within SMa1182 at 649.227 kb on + strand, within SMa1182 at 649.228 kb on - strand, within SMa1182 at 649.344 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.676 kb on + strand, within SMa1182 at 649.677 kb on - strand, within SMa1182 at 649.677 kb on - strand, within SMa1182 at 649.805 kb on + strand at 649.806 kb on - strand at 649.812 kb on - strand at 649.814 kb on + strand at 649.814 kb on + strand at 649.905 kb on - strand at 650.206 kb on + strand, within SMa1183 at 650.297 kb on - strand, within SMa1183 at 650.297 kb on - strand, within SMa1183 at 650.328 kb on - strand, within SMa1183 at 650.384 kb on + strand, within SMa1183 at 650.434 kb on + strand, within SMa1183 at 650.448 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.451 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.582 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.822 kb on + strand, within SMa1183 at 650.823 kb on - strand, within SMa1183 at 650.830 kb on + strand, within SMa1183
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 647,126 - SMa1179 0.64 -0.4 647,169 + SMa1179 0.66 +0.3 647,170 - SMa1179 0.66 -0.4 647,170 - SMa1179 0.66 +2.9 647,292 - SMa1179 0.71 +0.6 647,401 + SMa1179 0.76 +0.4 647,401 + SMa1179 0.76 +0.8 647,401 + SMa1179 0.76 -0.6 647,401 + SMa1179 0.76 +0.5 647,401 + SMa1179 0.76 +0.2 647,402 - SMa1179 0.76 -0.6 647,402 - SMa1179 0.76 +0.3 647,402 - SMa1179 0.76 +0.3 647,402 - SMa1179 0.76 -0.3 647,575 + SMa1179 0.84 -2.7 647,575 + SMa1179 0.84 -0.6 647,575 + SMa1179 0.84 +0.3 647,749 + -1.0 647,749 + -0.7 647,749 + -0.0 647,749 + +1.2 647,749 + -0.6 647,749 + +1.0 647,750 - -0.1 647,773 + +0.4 647,998 + +0.5 647,998 + -0.2 647,999 - -0.3 647,999 - +0.2 647,999 - +0.1 648,159 - +0.2 648,159 - +0.1 648,161 + SMa1182 0.10 +1.1 648,161 + SMa1182 0.10 -0.1 648,162 - SMa1182 0.10 +0.6 648,162 - SMa1182 0.10 -0.0 648,162 - SMa1182 0.10 -0.4 648,162 - SMa1182 0.10 +1.3 648,313 - SMa1182 0.18 +0.5 648,313 - SMa1182 0.18 -0.2 648,356 + SMa1182 0.20 +0.5 648,407 + SMa1182 0.23 +0.2 648,408 - SMa1182 0.23 +1.2 648,643 + SMa1182 0.35 -1.3 648,643 + SMa1182 0.35 +0.1 648,735 - SMa1182 0.40 +0.1 648,735 - SMa1182 0.40 +0.7 648,752 + SMa1182 0.41 +1.8 648,860 + SMa1182 0.46 +0.8 648,912 - SMa1182 0.49 +0.0 648,924 + SMa1182 0.50 +0.3 648,956 - SMa1182 0.51 +0.4 649,118 + SMa1182 0.60 -1.7 649,119 - SMa1182 0.60 +1.4 649,139 + SMa1182 0.61 +0.4 649,140 - -1.3 649,202 + SMa1182 0.64 +0.7 649,227 + SMa1182 0.66 +0.3 649,228 - SMa1182 0.66 -0.2 649,344 - SMa1182 0.72 -0.2 649,605 - SMa1182 0.85 +1.7 649,605 - SMa1182 0.85 +0.4 649,605 - SMa1182 0.85 -1.1 649,676 + SMa1182 0.89 +1.1 649,677 - SMa1182 0.89 +0.4 649,677 - SMa1182 0.89 +0.0 649,805 + -0.4 649,806 - +0.2 649,812 - +0.1 649,814 + +0.7 649,814 + -0.2 649,905 - -0.2 650,206 + SMa1183 0.23 +0.6 650,297 - SMa1183 0.30 -0.2 650,297 - SMa1183 0.30 -0.3 650,328 - SMa1183 0.32 -0.8 650,384 + SMa1183 0.36 -0.4 650,434 + SMa1183 0.40 -0.2 650,448 + SMa1183 0.41 +1.6 650,450 + SMa1183 0.41 -0.2 650,450 + SMa1183 0.41 -0.6 650,451 - SMa1183 0.41 +0.8 650,522 - SMa1183 0.47 -0.5 650,522 - SMa1183 0.47 -0.3 650,528 - SMa1183 0.47 -0.1 650,528 - SMa1183 0.47 -0.0 650,582 - SMa1183 0.51 -0.2 650,663 - SMa1183 0.57 -0.5 650,663 - SMa1183 0.57 -0.3 650,822 + SMa1183 0.69 -0.1 650,823 - SMa1183 0.69 +1.0 650,830 + SMa1183 0.69 -0.3
Or see this region's nucleotide sequence