Strain Fitness in Sinorhizobium meliloti 1021 around SMa1182

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1179 and SMa1182 are separated by 25 nucleotidesSMa1182 and SMa1183 overlap by 1 nucleotides SMa1179: SMa1179 - NosR regulatory protein for N2O reductase, at 645,676 to 647,943 SMa1179 SMa1182: SMa1182 - nitrous-oxide reductase, at 647,969 to 649,888 SMa1182 SMa1183: SMa1183 - NosD nitrous oxidase accessory protein, at 649,888 to 651,249 SMa1183 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2 3at 647.126 kb on - strand, within SMa1179at 647.169 kb on + strand, within SMa1179at 647.170 kb on - strand, within SMa1179at 647.170 kb on - strand, within SMa1179at 647.292 kb on - strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.750 kb on - strandat 647.773 kb on + strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 648.159 kb on - strandat 648.159 kb on - strandat 648.161 kb on + strand, within SMa1182at 648.161 kb on + strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.313 kb on - strand, within SMa1182at 648.313 kb on - strand, within SMa1182at 648.356 kb on + strand, within SMa1182at 648.407 kb on + strand, within SMa1182at 648.408 kb on - strand, within SMa1182at 648.643 kb on + strand, within SMa1182at 648.643 kb on + strand, within SMa1182at 648.735 kb on - strand, within SMa1182at 648.735 kb on - strand, within SMa1182at 648.752 kb on + strand, within SMa1182at 648.860 kb on + strand, within SMa1182at 648.912 kb on - strand, within SMa1182at 648.924 kb on + strand, within SMa1182at 648.956 kb on - strand, within SMa1182at 649.118 kb on + strand, within SMa1182at 649.119 kb on - strand, within SMa1182at 649.139 kb on + strand, within SMa1182at 649.140 kb on - strandat 649.202 kb on + strand, within SMa1182at 649.227 kb on + strand, within SMa1182at 649.228 kb on - strand, within SMa1182at 649.344 kb on - strand, within SMa1182at 649.605 kb on - strand, within SMa1182at 649.605 kb on - strand, within SMa1182at 649.605 kb on - strand, within SMa1182at 649.676 kb on + strand, within SMa1182at 649.677 kb on - strand, within SMa1182at 649.677 kb on - strand, within SMa1182at 649.805 kb on + strandat 649.806 kb on - strandat 649.812 kb on - strandat 649.814 kb on + strandat 649.814 kb on + strandat 649.905 kb on - strandat 650.206 kb on + strand, within SMa1183at 650.297 kb on - strand, within SMa1183at 650.297 kb on - strand, within SMa1183at 650.328 kb on - strand, within SMa1183at 650.384 kb on + strand, within SMa1183at 650.434 kb on + strand, within SMa1183at 650.448 kb on + strand, within SMa1183at 650.450 kb on + strand, within SMa1183at 650.450 kb on + strand, within SMa1183at 650.451 kb on - strand, within SMa1183at 650.522 kb on - strand, within SMa1183at 650.522 kb on - strand, within SMa1183at 650.528 kb on - strand, within SMa1183at 650.528 kb on - strand, within SMa1183at 650.582 kb on - strand, within SMa1183at 650.663 kb on - strand, within SMa1183at 650.663 kb on - strand, within SMa1183at 650.822 kb on + strand, within SMa1183at 650.823 kb on - strand, within SMa1183at 650.830 kb on + strand, within SMa1183

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
647,126 - SMa1179 0.64 -0.4
647,169 + SMa1179 0.66 +0.3
647,170 - SMa1179 0.66 -0.4
647,170 - SMa1179 0.66 +2.9
647,292 - SMa1179 0.71 +0.6
647,401 + SMa1179 0.76 +0.4
647,401 + SMa1179 0.76 +0.8
647,401 + SMa1179 0.76 -0.6
647,401 + SMa1179 0.76 +0.5
647,401 + SMa1179 0.76 +0.2
647,402 - SMa1179 0.76 -0.6
647,402 - SMa1179 0.76 +0.3
647,402 - SMa1179 0.76 +0.3
647,402 - SMa1179 0.76 -0.3
647,575 + SMa1179 0.84 -2.7
647,575 + SMa1179 0.84 -0.6
647,575 + SMa1179 0.84 +0.3
647,749 + -1.0
647,749 + -0.7
647,749 + -0.0
647,749 + +1.2
647,749 + -0.6
647,749 + +1.0
647,750 - -0.1
647,773 + +0.4
647,998 + +0.5
647,998 + -0.2
647,999 - -0.3
647,999 - +0.2
647,999 - +0.1
648,159 - +0.2
648,159 - +0.1
648,161 + SMa1182 0.10 +1.1
648,161 + SMa1182 0.10 -0.1
648,162 - SMa1182 0.10 +0.6
648,162 - SMa1182 0.10 -0.0
648,162 - SMa1182 0.10 -0.4
648,162 - SMa1182 0.10 +1.3
648,313 - SMa1182 0.18 +0.5
648,313 - SMa1182 0.18 -0.2
648,356 + SMa1182 0.20 +0.5
648,407 + SMa1182 0.23 +0.2
648,408 - SMa1182 0.23 +1.2
648,643 + SMa1182 0.35 -1.3
648,643 + SMa1182 0.35 +0.1
648,735 - SMa1182 0.40 +0.1
648,735 - SMa1182 0.40 +0.7
648,752 + SMa1182 0.41 +1.8
648,860 + SMa1182 0.46 +0.8
648,912 - SMa1182 0.49 +0.0
648,924 + SMa1182 0.50 +0.3
648,956 - SMa1182 0.51 +0.4
649,118 + SMa1182 0.60 -1.7
649,119 - SMa1182 0.60 +1.4
649,139 + SMa1182 0.61 +0.4
649,140 - -1.3
649,202 + SMa1182 0.64 +0.7
649,227 + SMa1182 0.66 +0.3
649,228 - SMa1182 0.66 -0.2
649,344 - SMa1182 0.72 -0.2
649,605 - SMa1182 0.85 +1.7
649,605 - SMa1182 0.85 +0.4
649,605 - SMa1182 0.85 -1.1
649,676 + SMa1182 0.89 +1.1
649,677 - SMa1182 0.89 +0.4
649,677 - SMa1182 0.89 +0.0
649,805 + -0.4
649,806 - +0.2
649,812 - +0.1
649,814 + +0.7
649,814 + -0.2
649,905 - -0.2
650,206 + SMa1183 0.23 +0.6
650,297 - SMa1183 0.30 -0.2
650,297 - SMa1183 0.30 -0.3
650,328 - SMa1183 0.32 -0.8
650,384 + SMa1183 0.36 -0.4
650,434 + SMa1183 0.40 -0.2
650,448 + SMa1183 0.41 +1.6
650,450 + SMa1183 0.41 -0.2
650,450 + SMa1183 0.41 -0.6
650,451 - SMa1183 0.41 +0.8
650,522 - SMa1183 0.47 -0.5
650,522 - SMa1183 0.47 -0.3
650,528 - SMa1183 0.47 -0.1
650,528 - SMa1183 0.47 -0.0
650,582 - SMa1183 0.51 -0.2
650,663 - SMa1183 0.57 -0.5
650,663 - SMa1183 0.57 -0.3
650,822 + SMa1183 0.69 -0.1
650,823 - SMa1183 0.69 +1.0
650,830 + SMa1183 0.69 -0.3

Or see this region's nucleotide sequence