Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1037 and SMa1038 are separated by 14 nucleotides SMa1038 and SMa1041 are separated by 6 nucleotides SMa1041 and SMa1043 are separated by 19 nucleotides SMa1043 and SMa1045 are separated by 92 nucleotides
SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975
SMa1037
SMa1038: SMa1038 - copper-containing oxidase, at 571,990 to 573,339
SMa1038
SMa1041: SMa1041 - copper oxidase, at 573,346 to 573,858
SMa1041
SMa1043: SMa1043 - hypothetical protein, at 573,878 to 574,162
SMa1043
SMa1045: SMa1045 - hypothetical protein, at 574,255 to 574,542
SMa1045
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 571.451 kb on + strand at 571.452 kb on - strand, within SMa1037 at 571.474 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.609 kb on + strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.770 kb on - strand, within SMa1037 at 572.064 kb on + strand at 572.119 kb on - strand at 572.141 kb on - strand at 572.142 kb on + strand, within SMa1038 at 572.143 kb on - strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.492 kb on - strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.670 kb on + strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.685 kb on + strand, within SMa1038 at 572.686 kb on - strand, within SMa1038 at 572.815 kb on - strand, within SMa1038 at 573.043 kb on + strand, within SMa1038 at 573.044 kb on - strand, within SMa1038 at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.367 kb on - strand at 573.367 kb on - strand at 573.389 kb on + strand at 573.389 kb on + strand at 573.389 kb on + strand at 574.141 kb on + strand at 574.141 kb on + strand at 574.142 kb on - strand at 574.160 kb on + strand at 574.160 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 571,451 + +1.0 571,452 - SMa1037 0.64 -0.7 571,474 + SMa1037 0.66 +0.9 571,607 + SMa1037 0.75 +0.6 571,607 + SMa1037 0.75 +0.8 571,609 + SMa1037 0.75 -0.2 571,610 - SMa1037 0.75 -0.7 571,610 - SMa1037 0.75 +0.2 571,610 - SMa1037 0.75 +0.1 571,770 - SMa1037 0.86 +0.6 572,064 + -0.9 572,119 - +0.2 572,141 - +0.0 572,142 + SMa1038 0.11 +1.0 572,143 - SMa1038 0.11 +1.4 572,491 + SMa1038 0.37 -0.3 572,491 + SMa1038 0.37 +0.0 572,491 + SMa1038 0.37 -0.5 572,492 - SMa1038 0.37 +0.3 572,614 + SMa1038 0.46 +0.0 572,614 + SMa1038 0.46 -1.6 572,614 + SMa1038 0.46 -0.4 572,615 - SMa1038 0.46 +0.8 572,615 - SMa1038 0.46 -0.1 572,635 + SMa1038 0.48 -1.1 572,635 + SMa1038 0.48 -0.6 572,635 + SMa1038 0.48 +2.2 572,636 - SMa1038 0.48 +0.3 572,636 - SMa1038 0.48 +0.6 572,670 + SMa1038 0.50 -0.5 572,671 - SMa1038 0.50 -1.9 572,671 - SMa1038 0.50 -0.1 572,671 - SMa1038 0.50 -2.1 572,671 - SMa1038 0.50 +0.1 572,685 + SMa1038 0.51 -0.3 572,686 - SMa1038 0.52 +0.4 572,815 - SMa1038 0.61 -0.5 573,043 + SMa1038 0.78 -0.6 573,044 - SMa1038 0.78 -0.3 573,324 + -0.5 573,324 + -0.7 573,324 + -1.3 573,324 + -0.2 573,324 + -0.4 573,325 - -1.2 573,325 - +1.0 573,325 - -0.3 573,366 + +0.1 573,366 + -0.6 573,366 + -1.3 573,366 + -3.5 573,367 - +1.1 573,367 - +2.2 573,389 + -0.4 573,389 + +0.2 573,389 + -1.2 574,141 + -2.3 574,141 + -1.1 574,142 - -1.4 574,160 + -0.1 574,160 + -2.0
Or see this region's nucleotide sequence