Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1013 and SMa1014 are separated by 85 nucleotides SMa1014 and SMa1016 are separated by 4 nucleotides SMa1016 and SMa1017 are separated by 142 nucleotides SMa1017 and SMa1018 overlap by 4 nucleotides SMa1018 and SMa1021 are separated by 180 nucleotides
SMa1013: SMa1013 - ATPase P, at 560,686 to 563,166
SMa1013
SMa1014: SMa1014 - HmrR, at 563,252 to 563,668
SMa1014
SMa1016: SMa1016 - acyltransferase, at 563,673 to 564,947
SMa1016
SMa1017: SMa1017 - hypothetical protein, at 565,090 to 565,296
SMa1017
SMa1018: SMa1018 - hypothetical protein, at 565,293 to 565,655
SMa1018
SMa1021: SMa1021 - hypothetical protein, at 565,836 to 566,402
SMa1021
Position (kb) 563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.015 kb on - strand at 563.053 kb on + strand at 563.131 kb on - strand at 563.227 kb on + strand at 563.227 kb on + strand at 563.227 kb on + strand at 563.228 kb on - strand at 563.233 kb on + strand at 563.234 kb on - strand at 563.235 kb on + strand at 563.285 kb on + strand at 563.521 kb on - strand, within SMa1014 at 563.732 kb on + strand at 563.733 kb on - strand at 563.733 kb on - strand at 563.733 kb on - strand at 563.736 kb on + strand at 563.754 kb on + strand at 563.800 kb on + strand at 563.884 kb on + strand, within SMa1016 at 563.884 kb on + strand, within SMa1016 at 563.884 kb on + strand, within SMa1016 at 563.892 kb on - strand, within SMa1016 at 563.893 kb on + strand, within SMa1016 at 563.894 kb on - strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.945 kb on + strand, within SMa1016 at 563.946 kb on - strand, within SMa1016 at 563.963 kb on + strand, within SMa1016 at 564.198 kb on + strand, within SMa1016 at 564.199 kb on - strand, within SMa1016 at 564.221 kb on - strand, within SMa1016 at 564.221 kb on - strand, within SMa1016 at 564.232 kb on + strand, within SMa1016 at 564.233 kb on - strand, within SMa1016 at 564.233 kb on - strand, within SMa1016 at 564.248 kb on - strand, within SMa1016 at 564.285 kb on + strand, within SMa1016 at 564.565 kb on + strand, within SMa1016 at 564.600 kb on - strand, within SMa1016 at 564.620 kb on - strand, within SMa1016 at 564.636 kb on + strand, within SMa1016 at 564.637 kb on - strand, within SMa1016 at 564.637 kb on - strand, within SMa1016 at 564.775 kb on - strand, within SMa1016 at 564.877 kb on + strand at 564.886 kb on + strand at 564.887 kb on - strand at 564.887 kb on - strand at 564.951 kb on + strand at 564.955 kb on + strand at 564.973 kb on + strand at 564.974 kb on - strand at 565.067 kb on - strand at 565.094 kb on + strand at 565.094 kb on + strand at 565.095 kb on - strand at 565.095 kb on - strand at 565.135 kb on + strand, within SMa1017 at 565.136 kb on - strand, within SMa1017 at 565.339 kb on + strand, within SMa1018 at 565.339 kb on + strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.554 kb on + strand, within SMa1018 at 565.752 kb on + strand at 565.752 kb on + strand at 565.776 kb on + strand at 565.818 kb on + strand at 565.874 kb on + strand at 565.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 563,015 - +0.2 563,053 + -0.7 563,131 - -0.4 563,227 + -0.0 563,227 + -1.0 563,227 + -0.0 563,228 - -1.8 563,233 + -0.7 563,234 - +1.3 563,235 + +0.6 563,285 + +0.2 563,521 - SMa1014 0.65 +1.1 563,732 + +0.4 563,733 - +2.7 563,733 - -0.2 563,733 - +0.1 563,736 + -0.1 563,754 + -0.4 563,800 + +1.7 563,884 + SMa1016 0.17 -1.1 563,884 + SMa1016 0.17 +1.0 563,884 + SMa1016 0.17 -0.3 563,892 - SMa1016 0.17 -0.4 563,893 + SMa1016 0.17 -0.5 563,894 - SMa1016 0.17 -0.9 563,945 + SMa1016 0.21 +0.1 563,945 + SMa1016 0.21 -0.5 563,945 + SMa1016 0.21 +0.2 563,945 + SMa1016 0.21 -1.1 563,945 + SMa1016 0.21 +0.7 563,946 - SMa1016 0.21 -0.7 563,963 + SMa1016 0.23 -0.3 564,198 + SMa1016 0.41 -0.1 564,199 - SMa1016 0.41 +0.0 564,221 - SMa1016 0.43 -0.4 564,221 - SMa1016 0.43 -0.3 564,232 + SMa1016 0.44 -1.3 564,233 - SMa1016 0.44 +0.7 564,233 - SMa1016 0.44 +0.8 564,248 - SMa1016 0.45 +0.4 564,285 + SMa1016 0.48 -0.2 564,565 + SMa1016 0.70 -0.4 564,600 - SMa1016 0.73 -0.1 564,620 - SMa1016 0.74 -0.9 564,636 + SMa1016 0.76 -1.4 564,637 - SMa1016 0.76 -3.0 564,637 - SMa1016 0.76 +0.8 564,775 - SMa1016 0.86 +0.7 564,877 + +1.2 564,886 + +0.4 564,887 - +0.5 564,887 - +0.8 564,951 + -1.1 564,955 + -1.8 564,973 + +0.1 564,974 - -0.9 565,067 - -0.3 565,094 + +0.4 565,094 + -0.5 565,095 - -0.3 565,095 - +0.2 565,135 + SMa1017 0.22 +0.4 565,136 - SMa1017 0.22 -0.2 565,339 + SMa1018 0.13 -0.2 565,339 + SMa1018 0.13 +0.1 565,340 - SMa1018 0.13 +0.6 565,340 - SMa1018 0.13 +0.1 565,340 - SMa1018 0.13 +1.3 565,340 - SMa1018 0.13 -0.4 565,340 - SMa1018 0.13 -1.6 565,554 + SMa1018 0.72 +0.3 565,752 + +0.3 565,752 + -1.6 565,776 + +0.6 565,818 + +0.5 565,874 + -0.3 565,875 - -0.4
Or see this region's nucleotide sequence