Strain Fitness in Sinorhizobium meliloti 1021 around SMa0969

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0967 and SMa0969 are separated by 245 nucleotidesSMa0969 and SMa0972 are separated by 182 nucleotides SMa0967: SMa0967 - hypothetical protein, at 539,831 to 540,751 SMa0967 SMa0969: SMa0969 - Response regulator, at 540,997 to 541,746 SMa0969 SMa0972: SMa0972 - hypothetical protein, at 541,929 to 543,182 SMa0972 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2 3at 540.014 kb on + strand, within SMa0967at 540.018 kb on + strand, within SMa0967at 540.018 kb on + strand, within SMa0967at 540.019 kb on - strand, within SMa0967at 540.114 kb on + strand, within SMa0967at 540.114 kb on + strand, within SMa0967at 540.114 kb on + strand, within SMa0967at 540.114 kb on + strand, within SMa0967at 540.115 kb on - strand, within SMa0967at 540.144 kb on + strand, within SMa0967at 540.144 kb on + strand, within SMa0967at 540.144 kb on + strand, within SMa0967at 540.144 kb on + strand, within SMa0967at 540.145 kb on - strand, within SMa0967at 540.261 kb on + strand, within SMa0967at 540.337 kb on - strand, within SMa0967at 540.337 kb on - strand, within SMa0967at 540.337 kb on - strand, within SMa0967at 540.375 kb on + strand, within SMa0967at 540.376 kb on - strand, within SMa0967at 540.487 kb on - strand, within SMa0967at 540.537 kb on + strand, within SMa0967at 540.537 kb on + strand, within SMa0967at 540.538 kb on - strand, within SMa0967at 540.538 kb on - strand, within SMa0967at 540.547 kb on + strand, within SMa0967at 540.548 kb on - strand, within SMa0967at 540.548 kb on - strand, within SMa0967at 540.548 kb on - strand, within SMa0967at 540.549 kb on + strand, within SMa0967at 540.594 kb on + strand, within SMa0967at 540.931 kb on + strandat 540.931 kb on + strandat 540.932 kb on - strandat 540.932 kb on - strandat 540.950 kb on + strandat 540.950 kb on + strandat 540.951 kb on - strandat 540.951 kb on - strandat 541.028 kb on - strandat 541.073 kb on - strand, within SMa0969at 541.090 kb on - strand, within SMa0969at 541.090 kb on - strand, within SMa0969at 541.140 kb on - strand, within SMa0969at 541.140 kb on - strand, within SMa0969at 541.157 kb on + strand, within SMa0969at 541.178 kb on + strand, within SMa0969at 541.229 kb on + strand, within SMa0969at 541.245 kb on - strand, within SMa0969at 541.298 kb on - strand, within SMa0969at 541.370 kb on - strand, within SMa0969at 541.370 kb on - strand, within SMa0969at 541.463 kb on + strand, within SMa0969at 541.464 kb on - strand, within SMa0969at 541.464 kb on - strand, within SMa0969at 541.489 kb on + strand, within SMa0969at 541.700 kb on + strandat 541.755 kb on - strandat 541.755 kb on - strandat 542.090 kb on - strand, within SMa0972at 542.136 kb on + strand, within SMa0972at 542.297 kb on + strand, within SMa0972at 542.297 kb on + strand, within SMa0972at 542.297 kb on + strand, within SMa0972at 542.298 kb on - strand, within SMa0972at 542.298 kb on - strand, within SMa0972at 542.301 kb on + strand, within SMa0972at 542.302 kb on - strand, within SMa0972at 542.302 kb on - strand, within SMa0972at 542.538 kb on + strand, within SMa0972at 542.538 kb on + strand, within SMa0972at 542.539 kb on - strand, within SMa0972at 542.539 kb on - strand, within SMa0972at 542.542 kb on - strand, within SMa0972at 542.592 kb on + strand, within SMa0972at 542.607 kb on + strand, within SMa0972at 542.607 kb on + strand, within SMa0972at 542.608 kb on - strand, within SMa0972at 542.629 kb on + strand, within SMa0972

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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540,014 + SMa0967 0.20 -0.3
540,018 + SMa0967 0.20 +0.3
540,018 + SMa0967 0.20 +0.2
540,019 - SMa0967 0.20 +0.5
540,114 + SMa0967 0.31 +0.6
540,114 + SMa0967 0.31 +0.6
540,114 + SMa0967 0.31 -0.7
540,114 + SMa0967 0.31 +0.3
540,115 - SMa0967 0.31 +0.9
540,144 + SMa0967 0.34 -0.6
540,144 + SMa0967 0.34 +0.3
540,144 + SMa0967 0.34 -0.5
540,144 + SMa0967 0.34 +0.3
540,145 - SMa0967 0.34 -2.0
540,261 + SMa0967 0.47 +0.0
540,337 - SMa0967 0.55 -0.6
540,337 - SMa0967 0.55 -0.2
540,337 - SMa0967 0.55 +0.2
540,375 + SMa0967 0.59 +3.0
540,376 - SMa0967 0.59 +2.0
540,487 - SMa0967 0.71 -0.4
540,537 + SMa0967 0.77 +2.0
540,537 + SMa0967 0.77 -0.3
540,538 - SMa0967 0.77 +2.0
540,538 - SMa0967 0.77 -0.2
540,547 + SMa0967 0.78 +0.2
540,548 - SMa0967 0.78 +1.2
540,548 - SMa0967 0.78 +0.3
540,548 - SMa0967 0.78 +0.4
540,549 + SMa0967 0.78 +0.8
540,594 + SMa0967 0.83 +0.6
540,931 + +0.3
540,931 + -0.4
540,932 - +0.9
540,932 - -0.2
540,950 + -0.2
540,950 + -0.5
540,951 - -0.9
540,951 - +1.3
541,028 - -0.3
541,073 - SMa0969 0.10 +0.4
541,090 - SMa0969 0.12 +1.2
541,090 - SMa0969 0.12 +0.7
541,140 - SMa0969 0.19 +0.7
541,140 - SMa0969 0.19 -0.1
541,157 + SMa0969 0.21 -0.1
541,178 + SMa0969 0.24 +0.4
541,229 + SMa0969 0.31 -0.7
541,245 - SMa0969 0.33 -0.6
541,298 - SMa0969 0.40 +0.1
541,370 - SMa0969 0.50 +0.7
541,370 - SMa0969 0.50 -0.4
541,463 + SMa0969 0.62 +1.6
541,464 - SMa0969 0.62 +0.3
541,464 - SMa0969 0.62 +0.6
541,489 + SMa0969 0.66 +0.2
541,700 + +0.3
541,755 - +1.0
541,755 - +1.1
542,090 - SMa0972 0.13 +2.0
542,136 + SMa0972 0.17 -1.2
542,297 + SMa0972 0.29 -1.6
542,297 + SMa0972 0.29 -0.1
542,297 + SMa0972 0.29 -0.0
542,298 - SMa0972 0.29 +1.2
542,298 - SMa0972 0.29 +0.4
542,301 + SMa0972 0.30 +1.4
542,302 - SMa0972 0.30 +0.2
542,302 - SMa0972 0.30 +1.3
542,538 + SMa0972 0.49 -0.0
542,538 + SMa0972 0.49 +0.3
542,539 - SMa0972 0.49 -0.5
542,539 - SMa0972 0.49 +0.3
542,542 - SMa0972 0.49 -0.1
542,592 + SMa0972 0.53 +0.5
542,607 + SMa0972 0.54 -0.6
542,607 + SMa0972 0.54 +0.6
542,608 - SMa0972 0.54 -0.4
542,629 + SMa0972 0.56 -1.5

Or see this region's nucleotide sequence