Strain Fitness in Sinorhizobium meliloti 1021 around SMa0892

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0890 and SMa0892 overlap by 1 nucleotidesSMa0892 and SMa0894 are separated by 116 nucleotidesSMa0894 and SMa0896 are separated by 166 nucleotides SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392 SMa0890 SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655 SMa0892 SMa0894: SMa0894 - hypothetical protein, at 500,772 to 501,068 SMa0894 SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954 SMa0896 Position (kb) 497 498 499 500 501Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 496.465 kb on + strand, within SMa0890at 496.465 kb on + strand, within SMa0890at 496.561 kb on + strand, within SMa0890at 496.561 kb on + strand, within SMa0890at 496.575 kb on + strand, within SMa0890at 496.576 kb on - strand, within SMa0890at 496.659 kb on - strand, within SMa0890at 496.659 kb on - strand, within SMa0890at 496.659 kb on - strand, within SMa0890at 496.751 kb on - strand, within SMa0890at 496.996 kb on - strand, within SMa0890at 497.035 kb on + strand, within SMa0890at 497.035 kb on + strand, within SMa0890at 497.036 kb on - strand, within SMa0890at 497.036 kb on - strand, within SMa0890at 497.280 kb on - strandat 497.280 kb on - strandat 497.362 kb on + strandat 497.363 kb on - strandat 497.363 kb on - strandat 497.623 kb on + strandat 497.644 kb on + strandat 497.645 kb on - strandat 497.732 kb on - strand, within SMa0892at 497.830 kb on + strand, within SMa0892at 498.158 kb on - strand, within SMa0892at 498.158 kb on - strand, within SMa0892at 498.217 kb on + strand, within SMa0892at 498.217 kb on + strand, within SMa0892at 498.317 kb on - strand, within SMa0892at 498.325 kb on + strand, within SMa0892at 498.325 kb on + strand, within SMa0892at 498.325 kb on + strand, within SMa0892at 498.325 kb on + strand, within SMa0892at 498.326 kb on - strand, within SMa0892at 498.377 kb on + strand, within SMa0892at 498.559 kb on + strand, within SMa0892at 498.560 kb on - strand, within SMa0892at 498.568 kb on + strand, within SMa0892at 498.568 kb on + strand, within SMa0892at 498.569 kb on - strand, within SMa0892at 498.569 kb on - strand, within SMa0892at 498.777 kb on - strand, within SMa0892at 499.069 kb on + strand, within SMa0892at 499.069 kb on + strand, within SMa0892at 499.070 kb on - strand, within SMa0892at 499.097 kb on + strand, within SMa0892at 499.098 kb on - strand, within SMa0892at 499.112 kb on + strand, within SMa0892at 499.134 kb on + strand, within SMa0892at 499.134 kb on + strand, within SMa0892at 499.135 kb on - strand, within SMa0892at 499.165 kb on + strand, within SMa0892at 499.231 kb on + strand, within SMa0892at 499.232 kb on - strand, within SMa0892at 499.448 kb on + strand, within SMa0892at 499.448 kb on + strand, within SMa0892at 499.448 kb on + strand, within SMa0892at 499.449 kb on - strand, within SMa0892at 499.476 kb on + strand, within SMa0892at 499.476 kb on + strand, within SMa0892at 499.528 kb on + strand, within SMa0892at 499.585 kb on + strand, within SMa0892at 499.652 kb on - strand, within SMa0892at 499.832 kb on + strand, within SMa0892at 499.833 kb on - strand, within SMa0892at 500.105 kb on + strand, within SMa0892at 500.106 kb on - strand, within SMa0892at 500.113 kb on + strand, within SMa0892at 500.113 kb on + strand, within SMa0892at 500.113 kb on + strand, within SMa0892at 500.113 kb on + strand, within SMa0892at 500.114 kb on - strand, within SMa0892at 500.122 kb on - strand, within SMa0892at 500.597 kb on + strandat 500.597 kb on + strandat 500.597 kb on + strandat 500.597 kb on + strandat 500.598 kb on - strandat 500.598 kb on - strandat 500.598 kb on - strandat 500.598 kb on - strandat 500.598 kb on - strandat 500.617 kb on - strandat 500.689 kb on + strandat 500.707 kb on - strandat 500.869 kb on - strand, within SMa0894at 500.869 kb on - strand, within SMa0894at 501.149 kb on - strandat 501.263 kb on - strandat 501.263 kb on - strandat 501.366 kb on + strand, within SMa0896at 501.492 kb on + strand, within SMa0896at 501.637 kb on + strand, within SMa0896at 501.638 kb on - strand, within SMa0896

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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496,465 + SMa0890 0.35 +0.2
496,465 + SMa0890 0.35 +4.0
496,561 + SMa0890 0.42 +0.1
496,561 + SMa0890 0.42 -0.0
496,575 + SMa0890 0.43 +0.4
496,576 - SMa0890 0.43 +0.6
496,659 - SMa0890 0.48 -1.9
496,659 - SMa0890 0.48 -0.8
496,659 - SMa0890 0.48 -0.6
496,751 - SMa0890 0.55 -0.2
496,996 - SMa0890 0.72 -1.2
497,035 + SMa0890 0.75 -1.5
497,035 + SMa0890 0.75 -1.6
497,036 - SMa0890 0.75 +0.7
497,036 - SMa0890 0.75 -0.0
497,280 - -0.6
497,280 - +0.6
497,362 + +0.2
497,363 - +0.7
497,363 - -0.8
497,623 + -1.4
497,644 + +1.0
497,645 - +0.3
497,732 - SMa0892 0.10 -0.6
497,830 + SMa0892 0.13 -0.8
498,158 - SMa0892 0.23 +0.0
498,158 - SMa0892 0.23 +0.8
498,217 + SMa0892 0.25 -0.2
498,217 + SMa0892 0.25 +0.8
498,317 - SMa0892 0.28 -0.6
498,325 + SMa0892 0.29 -2.8
498,325 + SMa0892 0.29 +0.3
498,325 + SMa0892 0.29 +0.6
498,325 + SMa0892 0.29 -1.3
498,326 - SMa0892 0.29 +0.1
498,377 + SMa0892 0.30 +0.4
498,559 + SMa0892 0.36 -0.5
498,560 - SMa0892 0.36 -0.9
498,568 + SMa0892 0.36 -0.5
498,568 + SMa0892 0.36 -0.0
498,569 - SMa0892 0.36 -0.3
498,569 - SMa0892 0.36 -0.6
498,777 - SMa0892 0.42 +0.1
499,069 + SMa0892 0.51 -0.1
499,069 + SMa0892 0.51 -1.2
499,070 - SMa0892 0.51 -0.8
499,097 + SMa0892 0.52 -0.2
499,098 - SMa0892 0.52 -1.6
499,112 + SMa0892 0.53 -0.5
499,134 + SMa0892 0.53 -1.1
499,134 + SMa0892 0.53 -0.4
499,135 - SMa0892 0.53 -0.0
499,165 + SMa0892 0.54 +0.1
499,231 + SMa0892 0.56 -0.1
499,232 - SMa0892 0.56 -0.7
499,448 + SMa0892 0.63 +0.2
499,448 + SMa0892 0.63 +0.2
499,448 + SMa0892 0.63 -2.3
499,449 - SMa0892 0.63 +0.2
499,476 + SMa0892 0.64 -1.2
499,476 + SMa0892 0.64 -0.7
499,528 + SMa0892 0.65 +1.1
499,585 + SMa0892 0.67 +1.7
499,652 - SMa0892 0.69 +1.2
499,832 + SMa0892 0.75 -0.9
499,833 - SMa0892 0.75 -0.2
500,105 + SMa0892 0.83 -0.1
500,106 - SMa0892 0.83 -0.6
500,113 + SMa0892 0.83 -0.1
500,113 + SMa0892 0.83 -2.0
500,113 + SMa0892 0.83 -0.2
500,113 + SMa0892 0.83 +3.1
500,114 - SMa0892 0.83 -0.3
500,122 - SMa0892 0.84 -0.7
500,597 + -0.1
500,597 + +0.4
500,597 + +0.2
500,597 + -0.3
500,598 - +0.3
500,598 - +0.2
500,598 - +0.0
500,598 - -3.2
500,598 - -1.0
500,617 - +0.5
500,689 + +0.6
500,707 - -0.6
500,869 - SMa0894 0.33 +0.6
500,869 - SMa0894 0.33 +0.1
501,149 - -0.1
501,263 - +0.5
501,263 - +0.8
501,366 + SMa0896 0.18 -1.0
501,492 + SMa0896 0.36 -0.6
501,637 + SMa0896 0.56 +0.0
501,638 - SMa0896 0.56 -0.7

Or see this region's nucleotide sequence