Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0711 and SMa0713 are separated by 1 nucleotides SMa0713 and SMa0714 overlap by 4 nucleotides SMa0714 and SMa0715 are separated by 1 nucleotides SMa0715 and SMa0717 overlap by 22 nucleotides
SMa0711: SMa0711 - ABC transporter permease, at 386,385 to 387,215
SMa0711
SMa0713: SMa0713 - ABC transporter ATP-binding protein, at 387,217 to 387,810
SMa0713
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 386.969 kb on - strand, within SMa0711 at 386.969 kb on - strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand at 387.159 kb on + strand at 387.159 kb on + strand at 387.160 kb on - strand at 387.160 kb on - strand at 387.177 kb on + strand at 387.245 kb on - strand at 387.314 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.501 kb on + strand, within SMa0713 at 387.657 kb on + strand, within SMa0713 at 387.728 kb on + strand, within SMa0713 at 387.781 kb on - strand at 387.872 kb on + strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 388.120 kb on - strand, within SMa0714 at 388.150 kb on - strand, within SMa0714 at 388.472 kb on + strand, within SMa0715 at 388.472 kb on + strand, within SMa0715 at 388.781 kb on + strand, within SMa0715 at 388.782 kb on - strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.995 kb on + strand, within SMa0715 at 388.996 kb on - strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.038 kb on - strand, within SMa0715 at 389.061 kb on + strand, within SMa0715 at 389.115 kb on - strand, within SMa0715 at 389.273 kb on + strand at 389.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 386,969 - SMa0711 0.70 -0.5 386,969 - SMa0711 0.70 -0.8 386,985 + SMa0711 0.72 +1.1 386,985 + SMa0711 0.72 +0.0 387,012 + SMa0711 0.75 +0.1 387,012 + SMa0711 0.75 -0.5 387,013 - SMa0711 0.76 +1.0 387,013 - SMa0711 0.76 +0.0 387,019 - SMa0711 0.76 -1.0 387,019 - SMa0711 0.76 -1.1 387,019 - -1.3 387,159 + +3.0 387,159 + +0.0 387,160 - -2.7 387,160 - -1.3 387,177 + -0.1 387,245 - -0.3 387,314 + SMa0713 0.16 -0.6 387,466 + SMa0713 0.42 -2.4 387,466 + SMa0713 0.42 -1.3 387,466 + SMa0713 0.42 +2.6 387,466 + SMa0713 0.42 +1.2 387,467 - SMa0713 0.42 -1.2 387,467 - SMa0713 0.42 -1.1 387,467 - SMa0713 0.42 +0.4 387,467 - SMa0713 0.42 +1.0 387,467 - SMa0713 0.42 +0.7 387,467 - SMa0713 0.42 -0.3 387,501 + SMa0713 0.48 +1.0 387,657 + SMa0713 0.74 -0.3 387,728 + SMa0713 0.86 +0.1 387,781 - -2.1 387,872 + SMa0714 0.13 -0.4 387,873 - SMa0714 0.13 +0.4 387,873 - SMa0714 0.13 -1.4 388,120 - SMa0714 0.63 -0.9 388,150 - SMa0714 0.69 -1.1 388,472 + SMa0715 0.17 +0.0 388,472 + SMa0715 0.17 -0.6 388,781 + SMa0715 0.48 -0.3 388,782 - SMa0715 0.49 -1.8 388,992 + SMa0715 0.70 -2.3 388,992 + SMa0715 0.70 +0.4 388,993 - SMa0715 0.70 +1.0 388,993 - SMa0715 0.70 +0.4 388,995 + SMa0715 0.70 -0.9 388,996 - SMa0715 0.70 -0.8 389,037 + SMa0715 0.75 +0.6 389,037 + SMa0715 0.75 +1.5 389,038 - SMa0715 0.75 +0.1 389,061 + SMa0715 0.77 -0.7 389,115 - SMa0715 0.82 -0.8 389,273 + -0.6 389,285 - -1.1
Or see this region's nucleotide sequence