Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0380 and SMa5019 are separated by 160 nucleotides SMa5019 and SMa0383 overlap by 4 nucleotides SMa0383 and SMa0384 are separated by 997 nucleotides
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993
SMa5019
SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588
SMa0383
SMa0384: SMa0384 - TRm3 transposase, at 207,586 to 208,788
SMa0384
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 204.435 kb on + strand at 204.454 kb on + strand at 204.549 kb on + strand at 204.556 kb on + strand at 204.569 kb on + strand at 204.569 kb on + strand at 204.570 kb on - strand at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 205.524 kb on + strand, within SMa0383 at 205.524 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.777 kb on - strand, within SMa0383 at 206.029 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.298 kb on + strand, within SMa0383 at 206.520 kb on + strand at 206.567 kb on - strand at 206.567 kb on - strand at 206.620 kb on + strand at 206.856 kb on - strand at 206.856 kb on - strand at 206.916 kb on + strand at 206.971 kb on - strand at 206.980 kb on + strand at 206.980 kb on + strand at 206.981 kb on - strand at 207.038 kb on + strand at 207.062 kb on + strand at 207.062 kb on + strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.071 kb on - strand at 207.138 kb on + strand at 207.151 kb on + strand at 207.151 kb on + strand at 207.152 kb on - strand at 207.152 kb on - strand at 207.184 kb on - strand at 207.195 kb on + strand at 207.195 kb on + strand at 207.196 kb on - strand at 207.226 kb on + strand at 207.290 kb on - strand at 207.351 kb on + strand at 207.351 kb on + strand at 207.352 kb on - strand at 207.411 kb on - strand at 207.413 kb on + strand at 207.509 kb on + strand at 207.510 kb on - strand at 207.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 204,435 + +1.5 204,454 + +0.0 204,549 + -1.1 204,556 + +1.1 204,569 + -0.0 204,569 + -0.2 204,570 - +0.5 204,655 + SMa5019 0.24 -1.5 204,655 + SMa5019 0.24 +1.1 204,655 + SMa5019 0.24 +0.4 204,655 + SMa5019 0.24 +0.6 204,656 - SMa5019 0.24 +0.1 204,656 - SMa5019 0.24 +0.5 204,659 + SMa5019 0.25 +0.4 204,659 + SMa5019 0.25 +0.4 204,660 - SMa5019 0.25 -0.2 204,660 - SMa5019 0.25 +1.5 204,660 - SMa5019 0.25 -0.1 205,524 + SMa0383 0.33 -1.0 205,524 + SMa0383 0.33 -5.3 205,545 + SMa0383 0.35 +2.1 205,545 + SMa0383 0.35 -0.1 205,546 - SMa0383 0.35 -1.5 205,546 - SMa0383 0.35 -0.6 205,648 - SMa0383 0.41 -0.4 205,648 - SMa0383 0.41 +0.9 205,777 - SMa0383 0.49 -0.4 206,029 + SMa0383 0.65 -1.1 206,176 + SMa0383 0.74 +0.3 206,176 + SMa0383 0.74 -0.1 206,176 + SMa0383 0.74 -0.9 206,298 + SMa0383 0.82 -0.7 206,520 + +0.5 206,567 - -0.4 206,567 - -0.4 206,620 + -0.1 206,856 - +0.4 206,856 - -0.4 206,916 + +1.1 206,971 - -0.7 206,980 + +1.0 206,980 + -0.8 206,981 - +1.0 207,038 + -0.1 207,062 + -0.9 207,062 + +0.3 207,063 - +1.0 207,063 - +0.2 207,063 - -0.1 207,063 - +0.1 207,071 - +0.9 207,138 + -0.2 207,151 + +0.0 207,151 + +0.3 207,152 - +0.2 207,152 - +0.8 207,184 - -0.4 207,195 + -0.9 207,195 + +0.1 207,196 - +0.7 207,226 + -1.9 207,290 - +0.7 207,351 + -0.4 207,351 + -0.7 207,352 - -1.7 207,411 - -0.9 207,413 + +0.1 207,509 + -1.3 207,510 - +0.1 207,520 + -1.2
Or see this region's nucleotide sequence