Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0222 and SMa0223 are separated by 73 nucleotides SMa0223 and SMa0224 overlap by 49 nucleotides SMa0224 and SMa0226 are separated by 199 nucleotides
SMa0222: SMa0222 - GntR family transcriptional regulator, at 122,050 to 122,778
SMa0222
SMa0223: SMa0223 - TetR family transcriptional regulator, at 122,852 to 123,637
SMa0223
SMa0224: SMa0224 - Permease, MFS, at 123,589 to 125,061
SMa0224
SMa0226: SMa0226 - dehydrogenase, at 125,261 to 126,253
SMa0226
Position (kb) 123
124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 122.956 kb on + strand, within SMa0223 at 122.972 kb on - strand, within SMa0223 at 123.057 kb on + strand, within SMa0223 at 123.069 kb on - strand, within SMa0223 at 123.137 kb on + strand, within SMa0223 at 123.137 kb on + strand, within SMa0223 at 123.151 kb on - strand, within SMa0223 at 123.291 kb on + strand, within SMa0223 at 123.292 kb on - strand, within SMa0223 at 123.381 kb on - strand, within SMa0223 at 123.497 kb on + strand, within SMa0223 at 123.660 kb on - strand at 123.700 kb on + strand at 123.700 kb on + strand at 123.701 kb on - strand at 123.709 kb on - strand at 123.772 kb on + strand, within SMa0224 at 123.773 kb on - strand, within SMa0224 at 123.957 kb on - strand, within SMa0224 at 123.957 kb on - strand, within SMa0224 at 124.020 kb on + strand, within SMa0224 at 124.021 kb on - strand, within SMa0224 at 124.185 kb on + strand, within SMa0224 at 124.252 kb on + strand, within SMa0224 at 124.277 kb on - strand, within SMa0224 at 124.319 kb on + strand, within SMa0224 at 124.320 kb on - strand, within SMa0224 at 124.398 kb on + strand, within SMa0224 at 124.398 kb on + strand, within SMa0224 at 124.407 kb on + strand, within SMa0224 at 124.408 kb on - strand, within SMa0224 at 124.408 kb on - strand, within SMa0224 at 124.577 kb on + strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.578 kb on - strand, within SMa0224 at 124.830 kb on + strand, within SMa0224 at 124.831 kb on - strand, within SMa0224 at 124.831 kb on - strand, within SMa0224 at 125.060 kb on - strand at 125.060 kb on - strand at 125.064 kb on - strand at 125.064 kb on - strand at 125.206 kb on - strand at 125.299 kb on - strand at 125.435 kb on + strand, within SMa0226 at 125.435 kb on + strand, within SMa0226 at 125.640 kb on - strand, within SMa0226 at 125.641 kb on + strand, within SMa0226 at 125.669 kb on + strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.670 kb on - strand, within SMa0226 at 125.912 kb on + strand, within SMa0226 at 125.913 kb on - strand, within SMa0226 at 125.913 kb on - strand, within SMa0226
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 122,956 + SMa0223 0.13 -0.3 122,972 - SMa0223 0.15 +0.0 123,057 + SMa0223 0.26 +1.1 123,069 - SMa0223 0.28 -0.0 123,137 + SMa0223 0.36 -0.3 123,137 + SMa0223 0.36 -1.9 123,151 - SMa0223 0.38 -0.8 123,291 + SMa0223 0.56 +0.2 123,292 - SMa0223 0.56 +0.3 123,381 - SMa0223 0.67 +0.5 123,497 + SMa0223 0.82 -1.2 123,660 - +1.0 123,700 + -0.8 123,700 + +0.2 123,701 - -1.0 123,709 - +4.3 123,772 + SMa0224 0.12 -1.1 123,773 - SMa0224 0.12 +0.0 123,957 - SMa0224 0.25 +0.4 123,957 - SMa0224 0.25 -0.7 124,020 + SMa0224 0.29 -0.9 124,021 - SMa0224 0.29 -0.9 124,185 + SMa0224 0.40 +0.1 124,252 + SMa0224 0.45 +0.7 124,277 - SMa0224 0.47 +1.1 124,319 + SMa0224 0.50 -0.5 124,320 - SMa0224 0.50 -0.7 124,398 + SMa0224 0.55 -0.3 124,398 + SMa0224 0.55 -0.1 124,407 + SMa0224 0.56 -0.7 124,408 - SMa0224 0.56 -1.2 124,408 - SMa0224 0.56 +0.3 124,577 + SMa0224 0.67 -1.1 124,578 - SMa0224 0.67 -0.3 124,578 - SMa0224 0.67 +0.4 124,578 - SMa0224 0.67 -1.4 124,830 + SMa0224 0.84 +0.4 124,831 - SMa0224 0.84 +0.3 124,831 - SMa0224 0.84 +1.4 125,060 - +1.7 125,060 - +2.3 125,064 - -0.4 125,064 - -1.7 125,206 - +1.7 125,299 - -2.3 125,435 + SMa0226 0.18 -0.7 125,435 + SMa0226 0.18 -1.0 125,640 - SMa0226 0.38 -1.1 125,641 + SMa0226 0.38 -2.3 125,669 + SMa0226 0.41 +0.3 125,670 - SMa0226 0.41 +4.9 125,670 - SMa0226 0.41 -2.1 125,670 - SMa0226 0.41 +1.1 125,912 + SMa0226 0.66 +0.6 125,913 - SMa0226 0.66 -0.3 125,913 - SMa0226 0.66 -0.2
Or see this region's nucleotide sequence