Strain Fitness in Sinorhizobium meliloti 1021 around SMa0216

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0214 and SMa0216 are separated by 31 nucleotidesSMa0216 and SMa0217 overlap by 4 nucleotides SMa0214: SMa0214 - 5-keto-4-deoxyuronate isomerase, at 116,673 to 117,515 SMa0214 SMa0216: SMa0216 - ABC transporter ATP-binding protein, at 117,547 to 118,287 SMa0216 SMa0217: SMa0217 - ABC transporter permease, at 118,284 to 119,363 SMa0217 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 116.604 kb on + strandat 116.605 kb on - strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.675 kb on - strandat 116.890 kb on + strand, within SMa0214at 116.896 kb on + strandat 116.896 kb on + strand, within SMa0214at 117.013 kb on + strand, within SMa0214at 117.014 kb on - strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.264 kb on - strand, within SMa0214at 117.387 kb on - strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.486 kb on + strandat 117.487 kb on - strandat 117.487 kb on - strandat 117.509 kb on + strandat 117.509 kb on + strandat 117.510 kb on - strandat 117.510 kb on - strandat 117.589 kb on - strandat 117.657 kb on - strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.801 kb on - strand, within SMa0216at 117.939 kb on + strand, within SMa0216at 117.982 kb on - strand, within SMa0216at 118.017 kb on + strand, within SMa0216at 118.018 kb on - strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.026 kb on - strand, within SMa0216at 118.100 kb on + strand, within SMa0216at 118.254 kb on + strandat 118.255 kb on - strandat 118.309 kb on - strandat 118.619 kb on + strand, within SMa0217at 118.825 kb on + strand, within SMa0217at 118.825 kb on + strand, within SMa0217at 118.826 kb on - strand, within SMa0217at 118.904 kb on + strand, within SMa0217at 118.905 kb on - strand, within SMa0217at 118.905 kb on - strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217at 119.017 kb on + strand, within SMa0217

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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116,604 + -0.8
116,605 - -0.3
116,670 + -0.1
116,670 + -0.3
116,670 + -0.6
116,670 + -0.8
116,675 - +0.5
116,890 + SMa0214 0.26 -1.1
116,896 + -0.4
116,896 + SMa0214 0.26 +0.0
117,013 + SMa0214 0.40 +0.3
117,014 - SMa0214 0.40 +2.7
117,130 + SMa0214 0.54 -0.4
117,130 + SMa0214 0.54 +0.8
117,130 + SMa0214 0.54 +1.1
117,264 - SMa0214 0.70 +0.4
117,387 - SMa0214 0.85 +0.3
117,388 + SMa0214 0.85 -0.6
117,388 + SMa0214 0.85 +0.6
117,388 + SMa0214 0.85 +1.1
117,388 + SMa0214 0.85 -1.8
117,388 + SMa0214 0.85 -0.8
117,388 + SMa0214 0.85 +0.8
117,388 + SMa0214 0.85 -0.2
117,389 - SMa0214 0.85 -0.0
117,389 - SMa0214 0.85 +0.1
117,389 - SMa0214 0.85 +1.1
117,389 - SMa0214 0.85 -1.4
117,486 + -1.4
117,487 - +0.8
117,487 - +0.1
117,509 + +0.6
117,509 + -0.4
117,510 - +1.6
117,510 - -0.4
117,589 - -0.5
117,657 - SMa0216 0.15 -0.6
117,748 + SMa0216 0.27 -1.6
117,748 + SMa0216 0.27 -0.0
117,801 - SMa0216 0.34 -0.4
117,939 + SMa0216 0.53 +0.6
117,982 - SMa0216 0.59 -0.9
118,017 + SMa0216 0.63 -0.6
118,018 - SMa0216 0.64 -0.9
118,025 + SMa0216 0.65 -0.1
118,025 + SMa0216 0.65 +0.1
118,025 + SMa0216 0.65 -1.4
118,026 - SMa0216 0.65 +0.6
118,100 + SMa0216 0.75 -0.1
118,254 + -0.7
118,255 - +0.1
118,309 - -0.4
118,619 + SMa0217 0.31 -1.4
118,825 + SMa0217 0.50 -0.4
118,825 + SMa0217 0.50 +0.6
118,826 - SMa0217 0.50 +0.1
118,904 + SMa0217 0.57 -0.8
118,905 - SMa0217 0.57 +0.2
118,905 - SMa0217 0.57 +0.2
119,017 + SMa0217 0.68 +0.6
119,017 + SMa0217 0.68 +0.0
119,017 + SMa0217 0.68 -0.4
119,017 + SMa0217 0.68 +0.1

Or see this region's nucleotide sequence