Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21641

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21640 and SM_b21641 are separated by 204 nucleotidesSM_b21641 and SM_b21642 are separated by 244 nucleotides SM_b21640: SM_b21640 - phenylacetate-CoA oxygenase subunit PaaA, at 1,667,831 to 1,668,829 _b21640 SM_b21641: SM_b21641 - ArsR family transcriptional regulator, at 1,669,034 to 1,669,954 _b21641 SM_b21642: SM_b21642 - hypothetical protein, at 1,670,199 to 1,670,714 _b21642 Position (kb) 1669 1670Strain fitness (log2 ratio) -2 -1 0 1at 1668.445 kb on - strand, within SM_b21640at 1668.463 kb on - strand, within SM_b21640at 1668.463 kb on - strand, within SM_b21640at 1668.534 kb on + strand, within SM_b21640at 1668.534 kb on + strand, within SM_b21640at 1668.535 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640at 1668.825 kb on + strandat 1668.825 kb on + strandat 1668.826 kb on - strandat 1668.826 kb on - strandat 1669.035 kb on + strandat 1669.129 kb on + strand, within SM_b21641at 1669.130 kb on - strand, within SM_b21641at 1669.185 kb on + strand, within SM_b21641at 1669.185 kb on + strand, within SM_b21641at 1669.289 kb on + strand, within SM_b21641at 1669.389 kb on + strand, within SM_b21641at 1669.689 kb on + strand, within SM_b21641at 1669.778 kb on - strand, within SM_b21641at 1669.864 kb on + strandat 1669.864 kb on + strandat 1669.865 kb on - strandat 1670.052 kb on - strandat 1670.065 kb on + strandat 1670.065 kb on + strandat 1670.066 kb on - strandat 1670.066 kb on - strandat 1670.066 kb on - strandat 1670.104 kb on + strandat 1670.219 kb on + strandat 1670.439 kb on + strand, within SM_b21642at 1670.440 kb on - strand, within SM_b21642at 1670.471 kb on + strand, within SM_b21642at 1670.477 kb on + strand, within SM_b21642at 1670.478 kb on - strand, within SM_b21642at 1670.715 kb on + strandat 1670.715 kb on + strandat 1670.726 kb on + strandat 1670.726 kb on + strandat 1670.727 kb on - strandat 1670.844 kb on - strandat 1670.844 kb on - strandat 1670.845 kb on + strandat 1670.877 kb on + strandat 1670.886 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
1,668,445 - SM_b21640 0.61 +0.2
1,668,463 - SM_b21640 0.63 -0.2
1,668,463 - SM_b21640 0.63 -1.3
1,668,534 + SM_b21640 0.70 -0.4
1,668,534 + SM_b21640 0.70 +1.5
1,668,535 - SM_b21640 0.70 -0.2
1,668,541 - SM_b21640 0.71 -0.1
1,668,541 - SM_b21640 0.71 -0.3
1,668,541 - SM_b21640 0.71 -0.4
1,668,825 + -0.1
1,668,825 + +0.5
1,668,826 - -0.4
1,668,826 - -0.2
1,669,035 + +0.2
1,669,129 + SM_b21641 0.10 -1.7
1,669,130 - SM_b21641 0.10 -1.0
1,669,185 + SM_b21641 0.16 +1.0
1,669,185 + SM_b21641 0.16 -0.2
1,669,289 + SM_b21641 0.28 -0.0
1,669,389 + SM_b21641 0.39 -1.2
1,669,689 + SM_b21641 0.71 -1.0
1,669,778 - SM_b21641 0.81 -1.1
1,669,864 + +0.9
1,669,864 + -0.7
1,669,865 - -0.3
1,670,052 - -1.1
1,670,065 + -0.7
1,670,065 + +0.4
1,670,066 - +1.2
1,670,066 - +1.0
1,670,066 - +0.8
1,670,104 + +0.6
1,670,219 + -0.0
1,670,439 + SM_b21642 0.47 +1.0
1,670,440 - SM_b21642 0.47 -0.8
1,670,471 + SM_b21642 0.53 -0.5
1,670,477 + SM_b21642 0.54 +0.4
1,670,478 - SM_b21642 0.54 -2.0
1,670,715 + +0.6
1,670,715 + +1.4
1,670,726 + -0.4
1,670,726 + +1.2
1,670,727 - -0.7
1,670,844 - +0.4
1,670,844 - +0.1
1,670,845 + +0.2
1,670,877 + +0.2
1,670,886 - +0.9

Or see this region's nucleotide sequence