Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21478

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21477 and SM_b21478 are separated by 15 nucleotidesSM_b21478 and SM_b21479 are separated by 316 nucleotidesSM_b21479 and SM_b21480 are separated by 44 nucleotidesSM_b21480 and SM_b21481 overlap by 7 nucleotides SM_b21477: SM_b21477 - reverse transcriptasematurase, at 1,400,899 to 1,402,077 _b21477 SM_b21478: SM_b21478 - hypothetical protein, at 1,402,093 to 1,402,710 _b21478 SM_b21479: SM_b21479 - hypothetical protein, at 1,403,027 to 1,403,329 _b21479 SM_b21480: SM_b21480 - hypothetical protein, at 1,403,374 to 1,403,634 _b21480 SM_b21481: SM_b21481 - hypothetical protein, at 1,403,628 to 1,404,104 _b21481 Position (kb) 1402 1403Strain fitness (log2 ratio) -1 0 1at 1402.301 kb on + strand, within SM_b21478at 1402.304 kb on + strand, within SM_b21478at 1402.304 kb on + strand, within SM_b21478at 1402.401 kb on + strand, within SM_b21478at 1402.402 kb on - strandat 1402.402 kb on - strand, within SM_b21478at 1402.514 kb on - strand, within SM_b21478at 1402.668 kb on + strandat 1402.669 kb on - strandat 1402.669 kb on - strandat 1402.671 kb on + strandat 1402.671 kb on + strandat 1402.672 kb on - strandat 1402.684 kb on - strandat 1402.686 kb on + strandat 1402.686 kb on + strandat 1402.686 kb on + strandat 1403.285 kb on + strand, within SM_b21479at 1403.285 kb on + strand, within SM_b21479at 1403.393 kb on - strandat 1403.393 kb on - strandat 1403.422 kb on - strand, within SM_b21480

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,402,301 + SM_b21478 0.34 -0.3
1,402,304 + SM_b21478 0.34 +0.4
1,402,304 + SM_b21478 0.34 -0.7
1,402,401 + SM_b21478 0.50 -0.3
1,402,402 - +0.1
1,402,402 - SM_b21478 0.50 -0.5
1,402,514 - SM_b21478 0.68 -1.7
1,402,668 + +1.7
1,402,669 - -0.0
1,402,669 - -0.0
1,402,671 + -0.1
1,402,671 + +1.4
1,402,672 - +0.6
1,402,684 - -1.1
1,402,686 + +0.4
1,402,686 + -0.8
1,402,686 + -1.2
1,403,285 + SM_b21479 0.85 -0.6
1,403,285 + SM_b21479 0.85 -0.3
1,403,393 - -0.5
1,403,393 - -0.6
1,403,422 - SM_b21480 0.18 +0.1

Or see this region's nucleotide sequence