Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20922 and SM_b21395 are separated by 26 nucleotides SM_b21395 and SM_b21396 are separated by 55 nucleotides SM_b21396 and SM_b21397 are separated by 265 nucleotides SM_b21397 and SM_b21398 are separated by 30 nucleotides
SM_b20922: SM_b20922 - hypothetical protein, at 1,327,663 to 1,328,715
_b20922
SM_b21395: SM_b21395 - hypothetical protein, at 1,328,742 to 1,329,278
_b21395
SM_b21396: SM_b21396 - hypothetical protein, at 1,329,334 to 1,329,780
_b21396
SM_b21397: SM_b21397 - hypothetical protein, at 1,330,046 to 1,330,282
_b21397
SM_b21398: SM_b21398 - hypothetical protein, at 1,330,313 to 1,330,531
_b21398
Position (kb)
1329
1330 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1328.438 kb on + strand, within SM_b20922 at 1328.438 kb on + strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.549 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.648 kb on + strand at 1328.774 kb on - strand at 1328.774 kb on - strand at 1328.774 kb on - strand at 1328.946 kb on - strand, within SM_b21395 at 1329.065 kb on + strand, within SM_b21395 at 1329.289 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.371 kb on + strand at 1329.372 kb on - strand at 1329.524 kb on + strand, within SM_b21396 at 1329.524 kb on + strand, within SM_b21396 at 1329.525 kb on - strand, within SM_b21396 at 1329.543 kb on + strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.544 kb on - strand, within SM_b21396 at 1329.631 kb on + strand, within SM_b21396 at 1329.632 kb on - strand, within SM_b21396 at 1329.632 kb on - strand, within SM_b21396 at 1329.703 kb on + strand, within SM_b21396 at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.960 kb on + strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1329.961 kb on - strand at 1330.047 kb on + strand at 1330.048 kb on - strand at 1330.197 kb on + strand, within SM_b21397 at 1330.224 kb on + strand, within SM_b21397 at 1330.224 kb on + strand, within SM_b21397 at 1330.285 kb on + strand at 1330.285 kb on + strand at 1330.285 kb on + strand at 1330.286 kb on - strand at 1330.297 kb on + strand at 1330.305 kb on + strand at 1330.409 kb on - strand, within SM_b21398 at 1330.507 kb on - strand, within SM_b21398 at 1330.656 kb on - strand at 1330.664 kb on + strand at 1330.664 kb on + strand at 1330.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,328,438 + SM_b20922 0.74 -0.6 1,328,438 + SM_b20922 0.74 +2.5 1,328,439 - SM_b20922 0.74 +0.3 1,328,439 - SM_b20922 0.74 -0.9 1,328,549 + SM_b20922 0.84 -0.5 1,328,597 + SM_b20922 0.89 -1.4 1,328,597 + SM_b20922 0.89 -1.0 1,328,597 + SM_b20922 0.89 -0.7 1,328,648 + -0.6 1,328,774 - -0.5 1,328,774 - -0.5 1,328,774 - -0.5 1,328,946 - SM_b21395 0.38 -0.6 1,329,065 + SM_b21395 0.60 -1.7 1,329,289 + -0.7 1,329,371 + +0.1 1,329,371 + -0.9 1,329,371 + -0.3 1,329,371 + +0.4 1,329,372 - -0.6 1,329,524 + SM_b21396 0.43 +0.2 1,329,524 + SM_b21396 0.43 -0.2 1,329,525 - SM_b21396 0.43 -0.2 1,329,543 + SM_b21396 0.47 +0.3 1,329,544 - SM_b21396 0.47 +0.6 1,329,544 - SM_b21396 0.47 +0.4 1,329,544 - SM_b21396 0.47 +0.2 1,329,631 + SM_b21396 0.66 -1.0 1,329,632 - SM_b21396 0.67 +0.2 1,329,632 - SM_b21396 0.67 +1.0 1,329,703 + SM_b21396 0.83 +0.9 1,329,960 + +0.5 1,329,960 + -0.6 1,329,960 + -0.4 1,329,960 + -0.5 1,329,960 + -0.6 1,329,961 - -0.7 1,329,961 - +1.5 1,329,961 - +0.5 1,329,961 - -1.5 1,330,047 + -3.0 1,330,048 - +0.5 1,330,197 + SM_b21397 0.64 +0.1 1,330,224 + SM_b21397 0.75 -0.2 1,330,224 + SM_b21397 0.75 +0.0 1,330,285 + +0.4 1,330,285 + +0.3 1,330,285 + +1.0 1,330,286 - +0.0 1,330,297 + +1.1 1,330,305 + -0.0 1,330,409 - SM_b21398 0.44 +0.5 1,330,507 - SM_b21398 0.89 +0.3 1,330,656 - +2.2 1,330,664 + +0.3 1,330,664 + -0.3 1,330,664 + +0.1
Or see this region's nucleotide sequence