Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21384

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21383 and SM_b21384 are separated by 103 nucleotidesSM_b21384 and SM_b21385 are separated by 234 nucleotides SM_b21383: SM_b21383 - SDR family dehydrogenase, at 1,046,369 to 1,047,259 _b21383 SM_b21384: SM_b21384 - SDR family dehydrogenase, at 1,047,363 to 1,048,106 _b21384 SM_b21385: SM_b21385 - AraC family transcriptional regulator, at 1,048,341 to 1,049,276 _b21385 Position (kb) 1047 1048 1049Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.392 kb on - strandat 1046.392 kb on - strandat 1046.393 kb on + strandat 1046.393 kb on + strandat 1046.394 kb on - strandat 1046.620 kb on - strand, within SM_b21383at 1046.650 kb on - strand, within SM_b21383at 1046.659 kb on - strand, within SM_b21383at 1046.681 kb on - strand, within SM_b21383at 1046.703 kb on - strand, within SM_b21383at 1046.936 kb on - strand, within SM_b21383at 1047.005 kb on + strand, within SM_b21383at 1047.032 kb on + strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383at 1047.227 kb on - strandat 1047.515 kb on + strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.517 kb on + strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.530 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.626 kb on - strand, within SM_b21384at 1047.655 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.675 kb on - strand, within SM_b21384at 1047.779 kb on + strand, within SM_b21384at 1047.854 kb on + strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.864 kb on + strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1048.006 kb on - strand, within SM_b21384at 1048.127 kb on - strandat 1048.151 kb on + strandat 1048.151 kb on + strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.261 kb on + strandat 1048.309 kb on + strandat 1048.310 kb on - strandat 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.372 kb on - strandat 1048.372 kb on - strandat 1048.412 kb on + strandat 1048.413 kb on - strandat 1048.413 kb on - strandat 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.473 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.520 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.546 kb on - strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.839 kb on + strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1049.050 kb on - strand, within SM_b21385

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,046,370 + -0.8
1,046,370 + +0.6
1,046,370 + +0.3
1,046,392 - -0.0
1,046,392 - -0.2
1,046,393 + +0.1
1,046,393 + -0.9
1,046,394 - +0.3
1,046,620 - SM_b21383 0.28 +0.1
1,046,650 - SM_b21383 0.32 +0.7
1,046,659 - SM_b21383 0.33 +0.0
1,046,681 - SM_b21383 0.35 -0.3
1,046,703 - SM_b21383 0.37 -1.3
1,046,936 - SM_b21383 0.64 -0.7
1,047,005 + SM_b21383 0.71 +0.3
1,047,032 + SM_b21383 0.74 -0.2
1,047,033 - SM_b21383 0.75 -0.3
1,047,033 - SM_b21383 0.75 +0.4
1,047,056 + SM_b21383 0.77 -0.4
1,047,056 + SM_b21383 0.77 -0.1
1,047,057 - SM_b21383 0.77 +1.5
1,047,057 - SM_b21383 0.77 -0.3
1,047,227 - +0.1
1,047,515 + SM_b21384 0.20 +0.1
1,047,516 - SM_b21384 0.21 -0.6
1,047,516 - SM_b21384 0.21 +0.7
1,047,516 - SM_b21384 0.21 -1.8
1,047,517 + SM_b21384 0.21 +0.2
1,047,518 - SM_b21384 0.21 +0.3
1,047,518 - SM_b21384 0.21 -0.4
1,047,530 + SM_b21384 0.22 +0.3
1,047,625 + SM_b21384 0.35 -0.1
1,047,625 + SM_b21384 0.35 +0.1
1,047,625 + SM_b21384 0.35 +0.2
1,047,625 + SM_b21384 0.35 +0.5
1,047,626 - SM_b21384 0.35 +1.8
1,047,655 + SM_b21384 0.39 -0.6
1,047,674 + SM_b21384 0.42 +0.3
1,047,674 + SM_b21384 0.42 +1.2
1,047,675 - SM_b21384 0.42 +0.2
1,047,779 + SM_b21384 0.56 +1.2
1,047,854 + SM_b21384 0.66 +0.4
1,047,855 - SM_b21384 0.66 -2.9
1,047,855 - SM_b21384 0.66 +0.6
1,047,864 + SM_b21384 0.67 +0.3
1,047,950 - SM_b21384 0.79 +0.7
1,047,950 - SM_b21384 0.79 -0.4
1,048,006 - SM_b21384 0.86 -0.7
1,048,127 - -0.6
1,048,151 + +0.3
1,048,151 + +2.3
1,048,152 - +1.2
1,048,152 - -1.5
1,048,152 - +0.1
1,048,152 - +0.3
1,048,261 + +0.3
1,048,309 + +0.4
1,048,310 - -1.3
1,048,371 + +1.4
1,048,371 + -1.4
1,048,371 + +1.3
1,048,372 - +1.0
1,048,372 - +1.0
1,048,412 + -1.5
1,048,413 - +0.6
1,048,413 - +1.1
1,048,463 - SM_b21385 0.13 -2.1
1,048,463 - SM_b21385 0.13 +1.7
1,048,463 - SM_b21385 0.13 -0.3
1,048,473 + SM_b21385 0.14 +0.9
1,048,519 + SM_b21385 0.19 -0.3
1,048,519 + SM_b21385 0.19 -2.4
1,048,520 - SM_b21385 0.19 -0.4
1,048,541 - SM_b21385 0.21 +0.1
1,048,541 - SM_b21385 0.21 -1.9
1,048,545 + SM_b21385 0.22 -0.5
1,048,545 + SM_b21385 0.22 +0.3
1,048,546 - SM_b21385 0.22 +0.2
1,048,623 + SM_b21385 0.30 +0.3
1,048,623 + SM_b21385 0.30 -0.7
1,048,688 + SM_b21385 0.37 -0.2
1,048,688 + SM_b21385 0.37 -0.2
1,048,688 + SM_b21385 0.37 +0.6
1,048,839 + SM_b21385 0.53 +0.4
1,048,840 - SM_b21385 0.53 +0.9
1,048,840 - SM_b21385 0.53 +0.3
1,048,899 + SM_b21385 0.60 -1.4
1,048,899 + SM_b21385 0.60 +0.0
1,048,899 + SM_b21385 0.60 -1.8
1,048,899 + SM_b21385 0.60 +0.7
1,048,900 - SM_b21385 0.60 -0.1
1,048,900 - SM_b21385 0.60 +0.5
1,048,900 - SM_b21385 0.60 -1.9
1,048,945 - SM_b21385 0.65 +0.3
1,048,945 - SM_b21385 0.65 -0.4
1,049,050 - SM_b21385 0.76 +0.4

Or see this region's nucleotide sequence