Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21300 and SM_b21301 are separated by 4 nucleotides SM_b21301 and SM_b21302 are separated by 124 nucleotides SM_b21302 and SM_b21303 are separated by 20 nucleotides
SM_b21300: SM_b21300 - deoxyribose-phosphate aldolase, at 881,501 to 882,505
_b21300
SM_b21301: SM_b21301 - ly membrane-anchored aldehyde dehydrogenase, at 882,510 to 884,894
_b21301
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
Position (kb) 882
883
884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 881.554 kb on + strand at 881.555 kb on - strand at 881.577 kb on + strand at 881.859 kb on - strand, within SM_b21300 at 882.275 kb on + strand, within SM_b21300 at 882.276 kb on - strand, within SM_b21300 at 882.305 kb on + strand, within SM_b21300 at 882.350 kb on + strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.473 kb on + strand at 882.474 kb on - strand at 882.543 kb on + strand at 882.620 kb on - strand at 882.620 kb on - strand at 882.804 kb on + strand, within SM_b21301 at 882.905 kb on - strand, within SM_b21301 at 882.928 kb on - strand, within SM_b21301 at 882.928 kb on - strand, within SM_b21301 at 883.097 kb on + strand, within SM_b21301 at 883.217 kb on + strand, within SM_b21301 at 883.736 kb on + strand, within SM_b21301 at 883.951 kb on - strand, within SM_b21301 at 883.956 kb on + strand, within SM_b21301 at 883.957 kb on - strand, within SM_b21301 at 884.257 kb on - strand, within SM_b21301 at 884.257 kb on - strand, within SM_b21301 at 884.259 kb on + strand, within SM_b21301 at 884.259 kb on + strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.382 kb on + strand, within SM_b21301 at 884.403 kb on + strand, within SM_b21301 at 884.601 kb on + strand, within SM_b21301 at 884.602 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.777 kb on + strand at 884.778 kb on - strand at 884.892 kb on + strand at 885.031 kb on - strand at 885.347 kb on - strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.425 kb on - strand, within SM_b21302 at 885.487 kb on + strand at 885.541 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.728 kb on + strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 881,554 + +0.5 881,555 - +1.0 881,577 + -0.5 881,859 - SM_b21300 0.36 +0.2 882,275 + SM_b21300 0.77 -0.3 882,276 - SM_b21300 0.77 +0.2 882,305 + SM_b21300 0.80 -0.4 882,350 + SM_b21300 0.84 +0.6 882,351 - SM_b21300 0.85 -3.1 882,351 - SM_b21300 0.85 +0.3 882,351 - SM_b21300 0.85 +0.3 882,473 + +0.7 882,474 - +0.2 882,543 + +0.7 882,620 - -0.8 882,620 - -0.2 882,804 + SM_b21301 0.12 -0.5 882,905 - SM_b21301 0.17 +0.3 882,928 - SM_b21301 0.18 +0.7 882,928 - SM_b21301 0.18 -0.2 883,097 + SM_b21301 0.25 +2.3 883,217 + SM_b21301 0.30 -0.1 883,736 + SM_b21301 0.51 +1.0 883,951 - SM_b21301 0.60 +0.0 883,956 + SM_b21301 0.61 +1.0 883,957 - SM_b21301 0.61 -0.2 884,257 - SM_b21301 0.73 +0.7 884,257 - SM_b21301 0.73 -0.2 884,259 + SM_b21301 0.73 +0.6 884,259 + SM_b21301 0.73 +0.2 884,260 - SM_b21301 0.73 -1.0 884,260 - SM_b21301 0.73 -1.1 884,260 - SM_b21301 0.73 +0.2 884,382 + SM_b21301 0.78 +0.2 884,403 + SM_b21301 0.79 -0.2 884,601 + SM_b21301 0.88 +2.0 884,602 - SM_b21301 0.88 +1.6 884,646 - SM_b21301 0.90 -0.4 884,646 - SM_b21301 0.90 +0.7 884,777 + -0.1 884,778 - +0.0 884,892 + +0.6 885,031 - -0.2 885,347 - SM_b21302 0.72 +0.0 885,370 + SM_b21302 0.77 -0.2 885,370 + SM_b21302 0.77 +1.4 885,425 - SM_b21302 0.89 +0.4 885,487 + +1.0 885,541 + SM_b21303 0.11 +2.6 885,645 + SM_b21303 0.35 +1.0 885,645 + SM_b21303 0.35 +0.7 885,645 + SM_b21303 0.35 +0.5 885,646 - SM_b21303 0.35 -0.5 885,646 - SM_b21303 0.35 -0.3 885,646 - SM_b21303 0.35 -0.2 885,728 + SM_b21303 0.54 -0.0 885,729 - SM_b21303 0.55 -0.8 885,729 - SM_b21303 0.55 +1.8
Or see this region's nucleotide sequence