Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21232

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21231 and SM_b21232 are separated by 256 nucleotidesSM_b21232 and SM_b21233 are separated by 2 nucleotidesSM_b21233 and SM_b21234 overlap by 4 nucleotides SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808 _b21231 SM_b21232: SM_b21232 - nucleotide sugar epimerase dehydratase, at 797,065 to 799,167 _b21232 SM_b21233: SM_b21233 - transposase of insertion sequence ISRm1 orfB protein, at 799,170 to 800,000 _b21233 SM_b21234: SM_b21234 - transposase of insertion sequence ISRm1 orfA protein, at 799,997 to 800,389 _b21234 Position (kb) 797 798 799 800Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 796.141 kb on + strand, within SM_b21231at 796.142 kb on - strand, within SM_b21231at 796.321 kb on + strand, within SM_b21231at 796.322 kb on - strand, within SM_b21231at 796.361 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.516 kb on + strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.689 kb on + strand, within SM_b21231at 796.920 kb on + strandat 796.920 kb on + strandat 796.920 kb on + strandat 796.921 kb on - strandat 796.956 kb on - strandat 797.055 kb on + strandat 797.055 kb on + strandat 797.546 kb on + strand, within SM_b21232at 797.607 kb on + strand, within SM_b21232at 797.608 kb on - strand, within SM_b21232at 797.765 kb on + strand, within SM_b21232at 797.765 kb on + strand, within SM_b21232at 797.766 kb on - strand, within SM_b21232at 797.766 kb on - strand, within SM_b21232at 798.032 kb on + strand, within SM_b21232at 798.086 kb on + strand, within SM_b21232at 798.095 kb on + strand, within SM_b21232at 798.095 kb on + strand, within SM_b21232at 798.096 kb on - strand, within SM_b21232at 798.096 kb on - strand, within SM_b21232at 798.564 kb on + strand, within SM_b21232at 798.566 kb on + strand, within SM_b21232at 798.566 kb on + strand, within SM_b21232at 798.602 kb on + strand, within SM_b21232at 798.602 kb on + strand, within SM_b21232at 798.603 kb on - strand, within SM_b21232at 798.603 kb on - strand, within SM_b21232at 798.890 kb on + strand, within SM_b21232at 798.909 kb on - strand, within SM_b21232at 798.940 kb on + strand, within SM_b21232at 798.940 kb on + strand, within SM_b21232at 798.941 kb on - strand, within SM_b21232at 798.950 kb on + strand, within SM_b21232at 799.016 kb on + strandat 799.021 kb on + strandat 799.022 kb on - strandat 799.073 kb on + strandat 799.073 kb on + strandat 799.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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796,141 + SM_b21231 0.42 -0.5
796,142 - SM_b21231 0.42 +0.2
796,321 + SM_b21231 0.58 -1.1
796,322 - SM_b21231 0.58 +0.7
796,361 - SM_b21231 0.61 +0.1
796,379 - SM_b21231 0.63 +0.6
796,379 - SM_b21231 0.63 -0.9
796,426 - SM_b21231 0.67 -0.9
796,426 - SM_b21231 0.67 +0.0
796,428 - SM_b21231 0.67 +0.4
796,428 - SM_b21231 0.67 -0.3
796,495 + SM_b21231 0.73 -0.5
796,495 + SM_b21231 0.73 -0.4
796,495 + SM_b21231 0.73 -0.9
796,495 + SM_b21231 0.73 -0.9
796,496 - SM_b21231 0.73 -0.7
796,496 - SM_b21231 0.73 +2.2
796,496 - SM_b21231 0.73 -2.4
796,496 - SM_b21231 0.73 -0.2
796,514 + SM_b21231 0.74 -0.1
796,514 + SM_b21231 0.74 -1.1
796,516 + SM_b21231 0.75 +0.5
796,517 - SM_b21231 0.75 +0.9
796,517 - SM_b21231 0.75 -0.9
796,517 - SM_b21231 0.75 -0.0
796,689 + SM_b21231 0.90 -0.1
796,920 + +0.1
796,920 + -0.1
796,920 + +0.7
796,921 - +0.1
796,956 - -4.0
797,055 + +0.2
797,055 + -0.3
797,546 + SM_b21232 0.23 +0.2
797,607 + SM_b21232 0.26 +0.2
797,608 - SM_b21232 0.26 -1.0
797,765 + SM_b21232 0.33 +0.4
797,765 + SM_b21232 0.33 +1.2
797,766 - SM_b21232 0.33 -0.6
797,766 - SM_b21232 0.33 +0.0
798,032 + SM_b21232 0.46 +0.3
798,086 + SM_b21232 0.49 -1.3
798,095 + SM_b21232 0.49 -0.7
798,095 + SM_b21232 0.49 +0.3
798,096 - SM_b21232 0.49 -0.5
798,096 - SM_b21232 0.49 +0.9
798,564 + SM_b21232 0.71 -1.2
798,566 + SM_b21232 0.71 +1.0
798,566 + SM_b21232 0.71 -1.5
798,602 + SM_b21232 0.73 -0.3
798,602 + SM_b21232 0.73 -0.3
798,603 - SM_b21232 0.73 +3.8
798,603 - SM_b21232 0.73 +0.1
798,890 + SM_b21232 0.87 -1.0
798,909 - SM_b21232 0.88 -0.4
798,940 + SM_b21232 0.89 -0.3
798,940 + SM_b21232 0.89 -0.5
798,941 - SM_b21232 0.89 -0.2
798,950 + SM_b21232 0.90 -0.0
799,016 + -1.0
799,021 + -1.2
799,022 - +1.4
799,073 + -0.2
799,073 + -1.9
799,114 + -0.3

Or see this region's nucleotide sequence