Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21090

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21089 and SM_b21090 are separated by 85 nucleotidesSM_b21090 and SM_b21091 are separated by 304 nucleotides SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370 _b21089 SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592 _b21090 SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907 _b21091 Position (kb) 732 733 734Strain fitness (log2 ratio) -2 -1 0 1at 731.532 kb on + strand, within SM_b21089at 731.594 kb on - strand, within SM_b21089at 731.594 kb on - strand, within SM_b21089at 731.631 kb on + strand, within SM_b21089at 731.632 kb on - strand, within SM_b21089at 731.642 kb on + strand, within SM_b21089at 731.678 kb on + strand, within SM_b21089at 731.679 kb on - strand, within SM_b21089at 731.679 kb on - strand, within SM_b21089at 731.679 kb on - strand, within SM_b21089at 731.696 kb on + strand, within SM_b21089at 731.884 kb on - strand, within SM_b21089at 731.949 kb on + strand, within SM_b21089at 731.949 kb on + strand, within SM_b21089at 731.950 kb on - strand, within SM_b21089at 731.950 kb on - strand, within SM_b21089at 732.018 kb on - strand, within SM_b21089at 732.033 kb on - strand, within SM_b21089at 732.041 kb on + strand, within SM_b21089at 732.042 kb on - strand, within SM_b21089at 732.042 kb on - strand, within SM_b21089at 732.129 kb on - strand, within SM_b21089at 732.621 kb on + strand, within SM_b21090at 732.621 kb on + strand, within SM_b21090at 732.621 kb on + strand, within SM_b21090at 732.621 kb on + strand, within SM_b21090at 732.622 kb on - strand, within SM_b21090at 732.759 kb on + strand, within SM_b21090at 732.930 kb on + strand, within SM_b21090at 732.930 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.134 kb on + strand, within SM_b21090at 733.135 kb on - strand, within SM_b21090at 733.141 kb on - strand, within SM_b21090at 733.150 kb on - strand, within SM_b21090at 733.250 kb on - strand, within SM_b21090at 733.470 kb on + strand, within SM_b21090at 733.471 kb on - strand, within SM_b21090at 733.471 kb on - strand, within SM_b21090at 733.670 kb on - strandat 733.670 kb on - strandat 733.670 kb on - strandat 733.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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731,532 + SM_b21089 0.22 +0.9
731,594 - SM_b21089 0.27 +0.2
731,594 - SM_b21089 0.27 -0.2
731,631 + SM_b21089 0.31 -0.1
731,632 - SM_b21089 0.31 -0.7
731,642 + SM_b21089 0.32 -0.0
731,678 + SM_b21089 0.35 +0.4
731,679 - SM_b21089 0.35 +0.4
731,679 - SM_b21089 0.35 -0.7
731,679 - SM_b21089 0.35 +0.9
731,696 + SM_b21089 0.37 -0.1
731,884 - SM_b21089 0.55 +0.8
731,949 + SM_b21089 0.61 -0.1
731,949 + SM_b21089 0.61 -0.6
731,950 - SM_b21089 0.61 -0.1
731,950 - SM_b21089 0.61 +0.3
732,018 - SM_b21089 0.67 -2.1
732,033 - SM_b21089 0.68 +0.0
732,041 + SM_b21089 0.69 -0.8
732,042 - SM_b21089 0.69 -0.7
732,042 - SM_b21089 0.69 -0.4
732,129 - SM_b21089 0.77 +1.5
732,621 + SM_b21090 0.15 -0.2
732,621 + SM_b21090 0.15 -0.3
732,621 + SM_b21090 0.15 +0.1
732,621 + SM_b21090 0.15 -0.3
732,622 - SM_b21090 0.15 +0.6
732,759 + SM_b21090 0.27 +0.1
732,930 + SM_b21090 0.42 +0.3
732,930 + SM_b21090 0.42 +0.3
733,134 + SM_b21090 0.60 -1.4
733,134 + SM_b21090 0.60 -0.6
733,134 + SM_b21090 0.60 -0.3
733,134 + SM_b21090 0.60 +0.0
733,135 - SM_b21090 0.60 -0.7
733,141 - SM_b21090 0.60 -2.1
733,150 - SM_b21090 0.61 +0.3
733,250 - SM_b21090 0.70 -0.7
733,470 + SM_b21090 0.89 -0.1
733,471 - SM_b21090 0.89 +0.0
733,471 - SM_b21090 0.89 +0.5
733,670 - +1.5
733,670 - -1.5
733,670 - -0.7
733,733 + -2.5

Or see this region's nucleotide sequence