Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20706

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20705 and SM_b20706 are separated by 133 nucleotidesSM_b20706 and SM_b20707 are separated by 51 nucleotides SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147 _b20705 SM_b20706: SM_b20706 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,508,281 to 1,509,057 _b20706 SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371 _b20707 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -2 -1 0 1 2at 1507.305 kb on - strandat 1507.368 kb on + strand, within SM_b20705at 1507.391 kb on + strand, within SM_b20705at 1507.439 kb on - strand, within SM_b20705at 1507.543 kb on - strand, within SM_b20705at 1507.569 kb on + strand, within SM_b20705at 1507.569 kb on + strand, within SM_b20705at 1507.570 kb on - strand, within SM_b20705at 1507.590 kb on + strand, within SM_b20705at 1507.590 kb on + strand, within SM_b20705at 1507.990 kb on - strand, within SM_b20705at 1507.990 kb on - strand, within SM_b20705at 1507.990 kb on - strand, within SM_b20705at 1507.990 kb on - strand, within SM_b20705at 1507.990 kb on - strand, within SM_b20705at 1507.991 kb on + strand, within SM_b20705at 1507.991 kb on + strand, within SM_b20705at 1507.991 kb on + strand, within SM_b20705at 1507.992 kb on - strand, within SM_b20705at 1507.992 kb on - strand, within SM_b20705at 1507.997 kb on - strand, within SM_b20705at 1507.997 kb on - strand, within SM_b20705at 1508.137 kb on + strandat 1508.146 kb on - strandat 1508.233 kb on - strandat 1508.377 kb on + strand, within SM_b20706at 1508.527 kb on + strand, within SM_b20706at 1508.527 kb on + strand, within SM_b20706at 1508.597 kb on - strand, within SM_b20706at 1508.597 kb on - strand, within SM_b20706at 1508.713 kb on + strand, within SM_b20706at 1508.926 kb on - strand, within SM_b20706at 1509.004 kb on + strandat 1509.005 kb on - strandat 1509.005 kb on - strandat 1509.005 kb on - strandat 1509.005 kb on - strandat 1509.025 kb on + strandat 1509.026 kb on - strandat 1509.026 kb on - strandat 1509.043 kb on + strandat 1509.167 kb on + strandat 1509.255 kb on + strand, within SM_b20707at 1509.328 kb on + strand, within SM_b20707at 1509.339 kb on - strand, within SM_b20707at 1509.339 kb on - strand, within SM_b20707at 1509.339 kb on - strand, within SM_b20707at 1509.569 kb on + strand, within SM_b20707at 1509.607 kb on + strand, within SM_b20707at 1509.607 kb on + strand, within SM_b20707at 1509.728 kb on + strand, within SM_b20707at 1509.728 kb on + strand, within SM_b20707at 1509.729 kb on - strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.801 kb on + strand, within SM_b20707at 1509.802 kb on - strand, within SM_b20707at 1509.885 kb on + strand, within SM_b20707at 1509.885 kb on + strand, within SM_b20707at 1509.908 kb on + strand, within SM_b20707at 1509.909 kb on - strand, within SM_b20707at 1509.909 kb on - strand, within SM_b20707at 1509.941 kb on + strand, within SM_b20707at 1509.942 kb on - strand, within SM_b20707at 1509.950 kb on + strand, within SM_b20707

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
1,507,305 - -0.1
1,507,368 + SM_b20705 0.14 -1.8
1,507,391 + SM_b20705 0.17 -0.8
1,507,439 - SM_b20705 0.22 +0.0
1,507,543 - SM_b20705 0.34 +0.9
1,507,569 + SM_b20705 0.37 -0.6
1,507,569 + SM_b20705 0.37 +0.0
1,507,570 - SM_b20705 0.37 -0.4
1,507,590 + SM_b20705 0.39 -0.8
1,507,590 + SM_b20705 0.39 -1.5
1,507,990 - SM_b20705 0.83 -1.4
1,507,990 - SM_b20705 0.83 -0.0
1,507,990 - SM_b20705 0.83 -1.4
1,507,990 - SM_b20705 0.83 +0.2
1,507,990 - SM_b20705 0.83 +0.5
1,507,991 + SM_b20705 0.83 -0.4
1,507,991 + SM_b20705 0.83 +0.6
1,507,991 + SM_b20705 0.83 -0.7
1,507,992 - SM_b20705 0.83 -0.0
1,507,992 - SM_b20705 0.83 -1.4
1,507,997 - SM_b20705 0.83 +0.3
1,507,997 - SM_b20705 0.83 +0.0
1,508,137 + -0.2
1,508,146 - +1.2
1,508,233 - +0.1
1,508,377 + SM_b20706 0.12 +1.9
1,508,527 + SM_b20706 0.32 -0.5
1,508,527 + SM_b20706 0.32 -0.1
1,508,597 - SM_b20706 0.41 -2.4
1,508,597 - SM_b20706 0.41 -0.4
1,508,713 + SM_b20706 0.56 +0.4
1,508,926 - SM_b20706 0.83 -0.8
1,509,004 + -0.8
1,509,005 - -0.8
1,509,005 - -0.6
1,509,005 - -0.9
1,509,005 - -0.5
1,509,025 + -1.3
1,509,026 - +1.7
1,509,026 - -0.2
1,509,043 + -0.2
1,509,167 + +0.0
1,509,255 + SM_b20707 0.12 -0.3
1,509,328 + SM_b20707 0.17 -0.8
1,509,339 - SM_b20707 0.18 -0.5
1,509,339 - SM_b20707 0.18 +0.9
1,509,339 - SM_b20707 0.18 +1.2
1,509,569 + SM_b20707 0.36 -0.4
1,509,607 + SM_b20707 0.39 +0.6
1,509,607 + SM_b20707 0.39 -0.0
1,509,728 + SM_b20707 0.49 +0.4
1,509,728 + SM_b20707 0.49 +0.7
1,509,729 - SM_b20707 0.49 -1.0
1,509,801 + SM_b20707 0.55 -0.1
1,509,801 + SM_b20707 0.55 +0.4
1,509,801 + SM_b20707 0.55 -0.2
1,509,802 - SM_b20707 0.55 -0.4
1,509,885 + SM_b20707 0.61 -1.7
1,509,885 + SM_b20707 0.61 -0.1
1,509,908 + SM_b20707 0.63 -0.3
1,509,909 - SM_b20707 0.63 +0.0
1,509,909 - SM_b20707 0.63 -0.2
1,509,941 + SM_b20707 0.66 -1.8
1,509,942 - SM_b20707 0.66 -0.4
1,509,950 + SM_b20707 0.67 -0.1

Or see this region's nucleotide sequence