Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20687 and SM_b20688 are separated by 1 nucleotides SM_b20688 and SM_b20689 are separated by 7 nucleotides SM_b20689 and SM_b20690 overlap by 4 nucleotides
SM_b20687: SM_b20687 - hypothetical protein, at 1,490,711 to 1,491,796
_b20687
SM_b20688: SM_b20688 - hypothetical protein, at 1,491,798 to 1,492,439
_b20688
SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220
_b20689
SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543
_b20690
Position (kb)
1491
1492
1493 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1490.993 kb on - strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.239 kb on + strand, within SM_b20687 at 1491.386 kb on + strand, within SM_b20687 at 1491.489 kb on - strand, within SM_b20687 at 1491.489 kb on - strand, within SM_b20687 at 1491.702 kb on - strand at 1491.702 kb on - strand at 1491.954 kb on + strand, within SM_b20688 at 1491.954 kb on + strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1491.957 kb on - strand, within SM_b20688 at 1492.018 kb on + strand, within SM_b20688 at 1492.023 kb on + strand, within SM_b20688 at 1492.211 kb on + strand, within SM_b20688 at 1492.309 kb on - strand, within SM_b20688 at 1492.600 kb on + strand, within SM_b20689 at 1492.708 kb on - strand, within SM_b20689 at 1492.763 kb on - strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.919 kb on - strand, within SM_b20689 at 1492.933 kb on + strand, within SM_b20689 at 1492.934 kb on - strand, within SM_b20689 at 1493.198 kb on + strand at 1493.198 kb on + strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.325 kb on + strand, within SM_b20690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,490,993 - SM_b20687 0.26 -1.1 1,491,239 + SM_b20687 0.49 -2.0 1,491,239 + SM_b20687 0.49 +0.6 1,491,239 + SM_b20687 0.49 -0.9 1,491,386 + SM_b20687 0.62 +0.0 1,491,489 - SM_b20687 0.72 -0.7 1,491,489 - SM_b20687 0.72 +1.2 1,491,702 - +1.2 1,491,702 - +0.2 1,491,954 + SM_b20688 0.24 -0.2 1,491,954 + SM_b20688 0.24 +0.9 1,491,957 - SM_b20688 0.25 -1.3 1,491,957 - SM_b20688 0.25 -0.5 1,492,018 + SM_b20688 0.34 -1.2 1,492,023 + SM_b20688 0.35 -1.2 1,492,211 + SM_b20688 0.64 +2.2 1,492,309 - SM_b20688 0.80 -0.9 1,492,600 + SM_b20689 0.20 +1.2 1,492,708 - SM_b20689 0.34 -0.5 1,492,763 - SM_b20689 0.41 -1.8 1,492,918 + SM_b20689 0.61 +0.2 1,492,918 + SM_b20689 0.61 -0.1 1,492,919 - SM_b20689 0.61 -0.3 1,492,933 + SM_b20689 0.63 -0.1 1,492,934 - SM_b20689 0.63 -0.6 1,493,198 + +0.0 1,493,198 + +0.6 1,493,219 - -1.4 1,493,219 - +1.2 1,493,219 - +0.4 1,493,325 + SM_b20690 0.33 -0.8
Or see this region's nucleotide sequence