Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20603

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21707 and SM_b20602 are separated by 18 nucleotidesSM_b20602 and SM_b20603 are separated by 5 nucleotidesSM_b20603 and SM_b20604 overlap by 4 nucleotides SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370 _b21707 SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141 _b20602 SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322 _b20603 SM_b20604: SM_b20604 - branched-chain amino acid ABC transporter permease, at 1,617,319 to 1,618,932 _b20604 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -2 -1 0 1 2at 1615.340 kb on - strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.403 kb on - strandat 1615.778 kb on - strand, within SM_b20602at 1615.778 kb on - strand, within SM_b20602at 1615.842 kb on - strand, within SM_b20602at 1616.047 kb on - strand, within SM_b20602at 1616.110 kb on + strandat 1616.110 kb on + strandat 1616.111 kb on - strandat 1616.111 kb on - strandat 1616.248 kb on - strandat 1616.351 kb on + strand, within SM_b20603at 1616.351 kb on + strand, within SM_b20603at 1616.351 kb on + strand, within SM_b20603at 1616.352 kb on - strand, within SM_b20603at 1616.352 kb on - strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.429 kb on + strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.430 kb on - strand, within SM_b20603at 1616.496 kb on + strand, within SM_b20603at 1616.497 kb on - strand, within SM_b20603at 1616.811 kb on + strand, within SM_b20603at 1616.811 kb on + strand, within SM_b20603at 1616.812 kb on - strand, within SM_b20603at 1616.841 kb on + strand, within SM_b20603at 1616.841 kb on + strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1616.842 kb on - strand, within SM_b20603at 1617.016 kb on - strand, within SM_b20603at 1617.048 kb on + strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.049 kb on - strand, within SM_b20603at 1617.153 kb on + strand, within SM_b20603at 1617.153 kb on + strand, within SM_b20603at 1617.154 kb on - strand, within SM_b20603at 1617.154 kb on - strand, within SM_b20603at 1617.162 kb on + strand, within SM_b20603at 1617.163 kb on - strand, within SM_b20603at 1617.186 kb on + strand, within SM_b20603at 1617.187 kb on - strand, within SM_b20603at 1617.532 kb on + strand, within SM_b20604at 1617.533 kb on - strand, within SM_b20604at 1617.533 kb on - strand, within SM_b20604at 1617.536 kb on + strand, within SM_b20604at 1617.537 kb on - strand, within SM_b20604at 1617.895 kb on + strand, within SM_b20604at 1617.895 kb on + strand, within SM_b20604at 1617.985 kb on - strand, within SM_b20604at 1617.985 kb on - strand, within SM_b20604at 1618.077 kb on + strand, within SM_b20604at 1618.077 kb on + strand, within SM_b20604at 1618.079 kb on + strand, within SM_b20604at 1618.079 kb on + strand, within SM_b20604at 1618.080 kb on - strand, within SM_b20604at 1618.194 kb on - strand, within SM_b20604at 1618.194 kb on - strand, within SM_b20604at 1618.197 kb on + strand, within SM_b20604at 1618.198 kb on + strand, within SM_b20604at 1618.198 kb on + strand, within SM_b20604at 1618.199 kb on - strand, within SM_b20604at 1618.199 kb on - strand, within SM_b20604at 1618.199 kb on - strand, within SM_b20604at 1618.199 kb on - strand, within SM_b20604at 1618.199 kb on - strand, within SM_b20604

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,615,340 - -0.5
1,615,402 + -0.7
1,615,402 + -0.7
1,615,402 + +2.6
1,615,402 + -1.0
1,615,402 + -0.2
1,615,403 - +0.5
1,615,778 - SM_b20602 0.52 -0.2
1,615,778 - SM_b20602 0.52 -0.8
1,615,842 - SM_b20602 0.60 +0.5
1,616,047 - SM_b20602 0.87 -2.7
1,616,110 + +0.8
1,616,110 + +0.2
1,616,111 - +1.9
1,616,111 - -0.6
1,616,248 - -0.1
1,616,351 + SM_b20603 0.17 +0.9
1,616,351 + SM_b20603 0.17 +0.5
1,616,351 + SM_b20603 0.17 +0.4
1,616,352 - SM_b20603 0.17 +0.6
1,616,352 - SM_b20603 0.17 -0.0
1,616,429 + SM_b20603 0.24 -2.1
1,616,429 + SM_b20603 0.24 +0.5
1,616,429 + SM_b20603 0.24 -0.6
1,616,430 - SM_b20603 0.24 -0.7
1,616,430 - SM_b20603 0.24 +0.2
1,616,430 - SM_b20603 0.24 -0.4
1,616,430 - SM_b20603 0.24 -0.6
1,616,496 + SM_b20603 0.30 +0.3
1,616,497 - SM_b20603 0.30 -0.8
1,616,811 + SM_b20603 0.56 -1.6
1,616,811 + SM_b20603 0.56 -0.7
1,616,812 - SM_b20603 0.57 -0.8
1,616,841 + SM_b20603 0.59 -2.3
1,616,841 + SM_b20603 0.59 -0.1
1,616,842 - SM_b20603 0.59 -0.1
1,616,842 - SM_b20603 0.59 -2.5
1,616,842 - SM_b20603 0.59 -2.2
1,617,016 - SM_b20603 0.74 -0.3
1,617,048 + SM_b20603 0.77 -0.6
1,617,049 - SM_b20603 0.77 -1.6
1,617,049 - SM_b20603 0.77 +1.2
1,617,049 - SM_b20603 0.77 -1.1
1,617,049 - SM_b20603 0.77 +0.2
1,617,153 + SM_b20603 0.86 +0.6
1,617,153 + SM_b20603 0.86 -0.3
1,617,154 - SM_b20603 0.86 +0.1
1,617,154 - SM_b20603 0.86 -0.2
1,617,162 + SM_b20603 0.86 +0.4
1,617,163 - SM_b20603 0.86 +0.2
1,617,186 + SM_b20603 0.88 -0.0
1,617,187 - SM_b20603 0.88 -0.4
1,617,532 + SM_b20604 0.13 -0.5
1,617,533 - SM_b20604 0.13 -0.0
1,617,533 - SM_b20604 0.13 -1.1
1,617,536 + SM_b20604 0.13 +1.2
1,617,537 - SM_b20604 0.14 -0.4
1,617,895 + SM_b20604 0.36 +2.2
1,617,895 + SM_b20604 0.36 +0.3
1,617,985 - SM_b20604 0.41 +0.2
1,617,985 - SM_b20604 0.41 -1.1
1,618,077 + SM_b20604 0.47 -2.0
1,618,077 + SM_b20604 0.47 +0.6
1,618,079 + SM_b20604 0.47 -0.2
1,618,079 + SM_b20604 0.47 -0.1
1,618,080 - SM_b20604 0.47 +0.8
1,618,194 - SM_b20604 0.54 -0.4
1,618,194 - SM_b20604 0.54 -0.0
1,618,197 + SM_b20604 0.54 +0.5
1,618,198 + SM_b20604 0.54 +0.2
1,618,198 + SM_b20604 0.54 -1.0
1,618,199 - SM_b20604 0.55 -2.3
1,618,199 - SM_b20604 0.55 +0.8
1,618,199 - SM_b20604 0.55 -0.4
1,618,199 - SM_b20604 0.55 +0.2
1,618,199 - SM_b20604 0.55 +1.7

Or see this region's nucleotide sequence