Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21707 and SM_b20602 are separated by 18 nucleotides SM_b20602 and SM_b20603 are separated by 5 nucleotides SM_b20603 and SM_b20604 overlap by 4 nucleotides
SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370
_b21707
SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141
_b20602
SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322
_b20603
SM_b20604: SM_b20604 - branched-chain amino acid ABC transporter permease, at 1,617,319 to 1,618,932
_b20604
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1615.340 kb on - strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.403 kb on - strand at 1615.778 kb on - strand, within SM_b20602 at 1615.778 kb on - strand, within SM_b20602 at 1615.842 kb on - strand, within SM_b20602 at 1616.047 kb on - strand, within SM_b20602 at 1616.110 kb on + strand at 1616.110 kb on + strand at 1616.111 kb on - strand at 1616.111 kb on - strand at 1616.248 kb on - strand at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.496 kb on + strand, within SM_b20603 at 1616.497 kb on - strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.812 kb on - strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1617.016 kb on - strand, within SM_b20603 at 1617.048 kb on + strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.162 kb on + strand, within SM_b20603 at 1617.163 kb on - strand, within SM_b20603 at 1617.186 kb on + strand, within SM_b20603 at 1617.187 kb on - strand, within SM_b20603 at 1617.532 kb on + strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.536 kb on + strand, within SM_b20604 at 1617.537 kb on - strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.080 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.197 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,615,340 - -0.5 1,615,402 + -0.7 1,615,402 + -0.7 1,615,402 + +2.6 1,615,402 + -1.0 1,615,402 + -0.2 1,615,403 - +0.5 1,615,778 - SM_b20602 0.52 -0.2 1,615,778 - SM_b20602 0.52 -0.8 1,615,842 - SM_b20602 0.60 +0.5 1,616,047 - SM_b20602 0.87 -2.7 1,616,110 + +0.8 1,616,110 + +0.2 1,616,111 - +1.9 1,616,111 - -0.6 1,616,248 - -0.1 1,616,351 + SM_b20603 0.17 +0.9 1,616,351 + SM_b20603 0.17 +0.5 1,616,351 + SM_b20603 0.17 +0.4 1,616,352 - SM_b20603 0.17 +0.6 1,616,352 - SM_b20603 0.17 -0.0 1,616,429 + SM_b20603 0.24 -2.1 1,616,429 + SM_b20603 0.24 +0.5 1,616,429 + SM_b20603 0.24 -0.6 1,616,430 - SM_b20603 0.24 -0.7 1,616,430 - SM_b20603 0.24 +0.2 1,616,430 - SM_b20603 0.24 -0.4 1,616,430 - SM_b20603 0.24 -0.6 1,616,496 + SM_b20603 0.30 +0.3 1,616,497 - SM_b20603 0.30 -0.8 1,616,811 + SM_b20603 0.56 -1.6 1,616,811 + SM_b20603 0.56 -0.7 1,616,812 - SM_b20603 0.57 -0.8 1,616,841 + SM_b20603 0.59 -2.3 1,616,841 + SM_b20603 0.59 -0.1 1,616,842 - SM_b20603 0.59 -0.1 1,616,842 - SM_b20603 0.59 -2.5 1,616,842 - SM_b20603 0.59 -2.2 1,617,016 - SM_b20603 0.74 -0.3 1,617,048 + SM_b20603 0.77 -0.6 1,617,049 - SM_b20603 0.77 -1.6 1,617,049 - SM_b20603 0.77 +1.2 1,617,049 - SM_b20603 0.77 -1.1 1,617,049 - SM_b20603 0.77 +0.2 1,617,153 + SM_b20603 0.86 +0.6 1,617,153 + SM_b20603 0.86 -0.3 1,617,154 - SM_b20603 0.86 +0.1 1,617,154 - SM_b20603 0.86 -0.2 1,617,162 + SM_b20603 0.86 +0.4 1,617,163 - SM_b20603 0.86 +0.2 1,617,186 + SM_b20603 0.88 -0.0 1,617,187 - SM_b20603 0.88 -0.4 1,617,532 + SM_b20604 0.13 -0.5 1,617,533 - SM_b20604 0.13 -0.0 1,617,533 - SM_b20604 0.13 -1.1 1,617,536 + SM_b20604 0.13 +1.2 1,617,537 - SM_b20604 0.14 -0.4 1,617,895 + SM_b20604 0.36 +2.2 1,617,895 + SM_b20604 0.36 +0.3 1,617,985 - SM_b20604 0.41 +0.2 1,617,985 - SM_b20604 0.41 -1.1 1,618,077 + SM_b20604 0.47 -2.0 1,618,077 + SM_b20604 0.47 +0.6 1,618,079 + SM_b20604 0.47 -0.2 1,618,079 + SM_b20604 0.47 -0.1 1,618,080 - SM_b20604 0.47 +0.8 1,618,194 - SM_b20604 0.54 -0.4 1,618,194 - SM_b20604 0.54 -0.0 1,618,197 + SM_b20604 0.54 +0.5 1,618,198 + SM_b20604 0.54 +0.2 1,618,198 + SM_b20604 0.54 -1.0 1,618,199 - SM_b20604 0.55 -2.3 1,618,199 - SM_b20604 0.55 +0.8 1,618,199 - SM_b20604 0.55 -0.4 1,618,199 - SM_b20604 0.55 +0.2 1,618,199 - SM_b20604 0.55 +1.7
Or see this region's nucleotide sequence