Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20571

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20570 and SM_b20571 are separated by 96 nucleotidesSM_b20571 and SM_b21691 are separated by 16 nucleotides SM_b20570: SM_b20570 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,582,692 to 1,583,684 _b20570 SM_b20571: SM_b20571 - aliphatic sulfonate ABC transporter permease, at 1,583,781 to 1,584,626 _b20571 SM_b21691: SM_b21691 - nitrilotriacetate monooxygenase subunit A, at 1,584,643 to 1,585,992 _b21691 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1582.892 kb on + strand, within SM_b20570at 1582.892 kb on + strand, within SM_b20570at 1582.962 kb on + strand, within SM_b20570at 1582.962 kb on + strand, within SM_b20570at 1582.963 kb on - strand, within SM_b20570at 1583.243 kb on - strand, within SM_b20570at 1583.264 kb on + strand, within SM_b20570at 1583.264 kb on + strand, within SM_b20570at 1583.283 kb on - strand, within SM_b20570at 1583.329 kb on + strand, within SM_b20570at 1583.330 kb on - strand, within SM_b20570at 1583.330 kb on - strand, within SM_b20570at 1583.543 kb on - strand, within SM_b20570at 1583.777 kb on - strandat 1583.905 kb on + strand, within SM_b20571at 1583.905 kb on + strand, within SM_b20571at 1584.073 kb on + strand, within SM_b20571at 1584.312 kb on + strand, within SM_b20571at 1584.313 kb on - strand, within SM_b20571at 1584.314 kb on + strand, within SM_b20571at 1584.315 kb on - strand, within SM_b20571at 1584.334 kb on - strand, within SM_b20571at 1584.557 kb on - strandat 1584.645 kb on - strandat 1584.645 kb on - strandat 1584.767 kb on - strandat 1584.905 kb on + strand, within SM_b21691at 1584.906 kb on - strand, within SM_b21691at 1584.906 kb on - strand, within SM_b21691at 1584.906 kb on - strand, within SM_b21691at 1584.935 kb on + strand, within SM_b21691at 1584.935 kb on + strand, within SM_b21691at 1584.936 kb on - strand, within SM_b21691at 1584.936 kb on - strand, within SM_b21691at 1585.133 kb on + strand, within SM_b21691at 1585.247 kb on + strand, within SM_b21691at 1585.248 kb on - strand, within SM_b21691at 1585.312 kb on + strand, within SM_b21691at 1585.544 kb on + strand, within SM_b21691

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,582,892 + SM_b20570 0.20 -3.6
1,582,892 + SM_b20570 0.20 -1.4
1,582,962 + SM_b20570 0.27 -0.1
1,582,962 + SM_b20570 0.27 -0.8
1,582,963 - SM_b20570 0.27 -1.6
1,583,243 - SM_b20570 0.55 +0.7
1,583,264 + SM_b20570 0.58 -0.3
1,583,264 + SM_b20570 0.58 -1.0
1,583,283 - SM_b20570 0.60 +1.2
1,583,329 + SM_b20570 0.64 -0.8
1,583,330 - SM_b20570 0.64 -0.4
1,583,330 - SM_b20570 0.64 +0.4
1,583,543 - SM_b20570 0.86 -2.0
1,583,777 - -2.1
1,583,905 + SM_b20571 0.15 +1.2
1,583,905 + SM_b20571 0.15 -0.3
1,584,073 + SM_b20571 0.35 -0.1
1,584,312 + SM_b20571 0.63 +0.7
1,584,313 - SM_b20571 0.63 +0.8
1,584,314 + SM_b20571 0.63 +0.2
1,584,315 - SM_b20571 0.63 +0.6
1,584,334 - SM_b20571 0.65 +2.8
1,584,557 - -0.2
1,584,645 - +0.0
1,584,645 - -1.1
1,584,767 - +0.3
1,584,905 + SM_b21691 0.19 -1.1
1,584,906 - SM_b21691 0.19 +0.1
1,584,906 - SM_b21691 0.19 +0.0
1,584,906 - SM_b21691 0.19 -0.3
1,584,935 + SM_b21691 0.22 +0.8
1,584,935 + SM_b21691 0.22 +0.2
1,584,936 - SM_b21691 0.22 -0.4
1,584,936 - SM_b21691 0.22 +0.1
1,585,133 + SM_b21691 0.36 +0.3
1,585,247 + SM_b21691 0.45 -0.4
1,585,248 - SM_b21691 0.45 +0.9
1,585,312 + SM_b21691 0.50 +0.5
1,585,544 + SM_b21691 0.67 +0.1

Or see this region's nucleotide sequence