Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20560 and SM_b20561 are separated by 693 nucleotides SM_b20561 and SM_b20562 are separated by 130 nucleotides
SM_b20560: SM_b20560 - hypothetical protein, at 584,682 to 584,903
_b20560
SM_b20561: SM_b20561 - hypothetical protein, at 585,597 to 586,055
_b20561
SM_b20562: SM_b20562 - hypothetical protein, at 586,186 to 587,100
_b20562
Position (kb) 585
586
587 Strain fitness (log2 ratio) -1
0
1
2
3 at 584.620 kb on + strand at 584.621 kb on - strand at 584.680 kb on + strand at 584.886 kb on + strand at 584.887 kb on - strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 585.035 kb on + strand at 585.120 kb on + strand at 585.120 kb on + strand at 585.121 kb on - strand at 585.203 kb on - strand at 585.203 kb on - strand at 585.387 kb on + strand at 585.387 kb on + strand at 585.497 kb on - strand at 585.557 kb on - strand at 585.557 kb on - strand at 585.557 kb on - strand at 585.599 kb on - strand at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.823 kb on - strand, within SM_b20561 at 585.930 kb on + strand, within SM_b20561 at 585.930 kb on + strand, within SM_b20561 at 586.006 kb on + strand, within SM_b20561 at 586.006 kb on + strand, within SM_b20561 at 586.007 kb on - strand, within SM_b20561 at 586.007 kb on - strand, within SM_b20561 at 586.057 kb on + strand at 586.058 kb on - strand at 586.058 kb on - strand at 586.102 kb on + strand at 586.107 kb on + strand at 586.107 kb on + strand at 586.108 kb on - strand at 586.119 kb on + strand at 586.119 kb on + strand at 586.120 kb on - strand at 586.120 kb on - strand at 586.122 kb on - strand at 586.179 kb on + strand at 586.179 kb on + strand at 586.179 kb on + strand at 586.188 kb on - strand at 586.250 kb on + strand at 586.251 kb on - strand at 586.256 kb on + strand at 586.256 kb on + strand at 586.257 kb on - strand at 586.257 kb on - strand at 586.372 kb on - strand, within SM_b20562 at 586.372 kb on - strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.637 kb on + strand, within SM_b20562 at 586.638 kb on - strand, within SM_b20562 at 586.643 kb on + strand, within SM_b20562 at 586.644 kb on - strand, within SM_b20562 at 586.722 kb on + strand, within SM_b20562 at 586.759 kb on + strand, within SM_b20562 at 586.778 kb on + strand, within SM_b20562 at 586.779 kb on - strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.881 kb on + strand, within SM_b20562 at 586.882 kb on - strand, within SM_b20562 at 586.889 kb on + strand, within SM_b20562 at 586.942 kb on + strand, within SM_b20562 at 586.943 kb on - strand, within SM_b20562
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 584,620 + +1.3 584,621 - +0.1 584,680 + +0.8 584,886 + +1.1 584,887 - +0.8 584,899 + -0.5 584,899 + +1.2 584,899 + +0.5 584,899 + +0.3 584,899 + +1.4 584,900 - +0.9 584,900 - +0.0 584,900 - -0.1 584,900 - +0.5 585,035 + +0.5 585,120 + -0.2 585,120 + +0.3 585,121 - +2.7 585,203 - +0.7 585,203 - -0.6 585,387 + +0.3 585,387 + -0.8 585,497 - -1.0 585,557 - +0.3 585,557 - -0.3 585,557 - +0.7 585,599 - +0.0 585,685 + SM_b20561 0.19 -0.1 585,685 + SM_b20561 0.19 +0.4 585,685 + SM_b20561 0.19 +0.3 585,685 + SM_b20561 0.19 +0.9 585,686 - SM_b20561 0.19 +0.4 585,686 - SM_b20561 0.19 +1.2 585,686 - SM_b20561 0.19 +0.1 585,686 - SM_b20561 0.19 +1.5 585,686 - SM_b20561 0.19 +3.2 585,686 - SM_b20561 0.19 +1.9 585,686 - SM_b20561 0.19 +0.0 585,823 - SM_b20561 0.49 +0.8 585,930 + SM_b20561 0.73 +1.2 585,930 + SM_b20561 0.73 +0.7 586,006 + SM_b20561 0.89 +0.0 586,006 + SM_b20561 0.89 +0.7 586,007 - SM_b20561 0.89 +0.5 586,007 - SM_b20561 0.89 +0.3 586,057 + +0.5 586,058 - +0.9 586,058 - +0.8 586,102 + +0.9 586,107 + +0.7 586,107 + -0.8 586,108 - -0.0 586,119 + -0.2 586,119 + -1.5 586,120 - +0.3 586,120 - -0.4 586,122 - +0.3 586,179 + +0.6 586,179 + +1.7 586,179 + -0.2 586,188 - +1.4 586,250 + +0.6 586,251 - +0.2 586,256 + -1.7 586,256 + +0.1 586,257 - +1.6 586,257 - -0.5 586,372 - SM_b20562 0.20 +0.7 586,372 - SM_b20562 0.20 +0.3 586,457 + SM_b20562 0.30 -1.0 586,457 + SM_b20562 0.30 +1.8 586,457 + SM_b20562 0.30 +1.1 586,458 - SM_b20562 0.30 +0.3 586,458 - SM_b20562 0.30 -0.2 586,612 + SM_b20562 0.47 +0.5 586,612 + SM_b20562 0.47 +1.4 586,612 + SM_b20562 0.47 -0.1 586,613 - SM_b20562 0.47 -0.4 586,613 - SM_b20562 0.47 +0.0 586,613 - SM_b20562 0.47 -0.1 586,613 - SM_b20562 0.47 +0.7 586,637 + SM_b20562 0.49 +0.9 586,638 - SM_b20562 0.49 +1.6 586,643 + SM_b20562 0.50 -0.7 586,644 - SM_b20562 0.50 +1.5 586,722 + SM_b20562 0.59 -0.5 586,759 + SM_b20562 0.63 +0.9 586,778 + SM_b20562 0.65 -0.8 586,779 - SM_b20562 0.65 +0.0 586,838 + SM_b20562 0.71 -0.4 586,838 + SM_b20562 0.71 +0.5 586,838 + SM_b20562 0.71 -1.0 586,839 - SM_b20562 0.71 -0.9 586,839 - SM_b20562 0.71 +0.8 586,881 + SM_b20562 0.76 +0.3 586,882 - SM_b20562 0.76 -0.2 586,889 + SM_b20562 0.77 +0.2 586,942 + SM_b20562 0.83 -0.0 586,943 - SM_b20562 0.83 -0.7
Or see this region's nucleotide sequence