Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20541 and SM_b20542 are separated by 62 nucleotides SM_b20542 and SM_b20544 overlap by 117 nucleotides SM_b20544 and SM_b20543 overlap by 304 nucleotides
SM_b20541: SM_b20541 - protein in ISRm14, at 568,337 to 569,989
_b20541
SM_b20542: SM_b20542 - protein in ISRm14, at 570,052 to 570,405
_b20542
SM_b20544: SM_b20544 - protein in ISRm14, at 570,289 to 570,705
_b20544
SM_b20543: SM_b20543 - protein in ISRm14, at 570,402 to 570,845
_b20543
Position (kb) 570
571 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 570.129 kb on - strand, within SM_b20542 at 570.129 kb on - strand, within SM_b20542 at 570.900 kb on + strand at 570.968 kb on + strand at 570.968 kb on + strand at 570.968 kb on + strand at 570.969 kb on - strand at 570.975 kb on + strand at 570.975 kb on + strand at 570.976 kb on - strand at 570.976 kb on - strand at 570.976 kb on - strand at 570.991 kb on + strand at 570.992 kb on - strand at 570.992 kb on - strand at 570.993 kb on + strand at 570.993 kb on + strand at 570.994 kb on - strand at 570.994 kb on - strand at 570.994 kb on - strand at 571.020 kb on + strand at 571.020 kb on + strand at 571.021 kb on - strand at 571.026 kb on - strand at 571.047 kb on + strand at 571.048 kb on - strand at 571.149 kb on - strand at 571.194 kb on - strand at 571.194 kb on - strand at 571.194 kb on - strand at 571.197 kb on + strand at 571.198 kb on - strand at 571.198 kb on - strand at 571.198 kb on - strand at 571.245 kb on - strand at 571.251 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.308 kb on - strand at 571.349 kb on + strand at 571.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 570,129 - SM_b20542 0.22 -0.9 570,129 - SM_b20542 0.22 -0.9 570,900 + +0.9 570,968 + -0.3 570,968 + -1.4 570,968 + +0.9 570,969 - -1.4 570,975 + +0.6 570,975 + -1.0 570,976 - -2.5 570,976 - -0.5 570,976 - -1.7 570,991 + +0.6 570,992 - -1.5 570,992 - -0.7 570,993 + -0.2 570,993 + -0.5 570,994 - +11.8 570,994 - +0.1 570,994 - -0.2 571,020 + +0.2 571,020 + -0.1 571,021 - -1.0 571,026 - -0.1 571,047 + -0.5 571,048 - +0.6 571,149 - -0.5 571,194 - +0.9 571,194 - -2.3 571,194 - -1.4 571,197 + -2.7 571,198 - -0.2 571,198 - -0.1 571,198 - +0.0 571,245 - -0.3 571,251 + +0.4 571,307 + +1.5 571,307 + +0.2 571,307 + -0.7 571,307 + -0.8 571,308 - -0.5 571,349 + +0.5 571,355 + -0.2
Or see this region's nucleotide sequence