Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20492

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20491 and SM_b20492 are separated by 321 nucleotidesSM_b20492 and SM_b20493 are separated by 114 nucleotidesSM_b20493 and SM_b20494 are separated by 122 nucleotides SM_b20491: SM_b20491 - hypothetical protein, at 508,667 to 509,245 _b20491 SM_b20492: SM_b20492 - short-chain oxidoreductase, at 509,567 to 510,469 _b20492 SM_b20493: SM_b20493 - short-chain dehydrogenase, at 510,584 to 511,318 _b20493 SM_b20494: SM_b20494 - transcriptional regulator, at 511,441 to 512,337 _b20494 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2at 508.596 kb on - strandat 508.617 kb on + strandat 508.618 kb on - strandat 508.699 kb on + strandat 508.700 kb on - strandat 508.775 kb on + strand, within SM_b20491at 508.865 kb on + strand, within SM_b20491at 508.866 kb on - strand, within SM_b20491at 508.896 kb on - strand, within SM_b20491at 508.903 kb on + strand, within SM_b20491at 508.904 kb on - strand, within SM_b20491at 508.933 kb on - strand, within SM_b20491at 509.043 kb on + strand, within SM_b20491at 509.046 kb on + strand, within SM_b20491at 509.047 kb on - strand, within SM_b20491at 509.153 kb on + strand, within SM_b20491at 509.170 kb on + strand, within SM_b20491at 509.171 kb on - strand, within SM_b20491at 509.185 kb on + strand, within SM_b20491at 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.210 kb on - strandat 509.213 kb on + strandat 509.213 kb on + strandat 509.213 kb on + strandat 509.214 kb on - strandat 509.251 kb on - strandat 509.263 kb on + strandat 509.263 kb on + strandat 509.264 kb on - strandat 509.298 kb on + strandat 509.387 kb on + strandat 509.388 kb on - strandat 509.588 kb on + strandat 509.588 kb on + strandat 509.589 kb on - strandat 509.592 kb on - strandat 509.956 kb on - strand, within SM_b20492at 509.997 kb on + strand, within SM_b20492at 509.998 kb on - strand, within SM_b20492at 510.009 kb on + strand, within SM_b20492at 510.010 kb on - strand, within SM_b20492at 510.010 kb on - strand, within SM_b20492at 510.119 kb on + strand, within SM_b20492at 510.119 kb on + strand, within SM_b20492at 510.120 kb on - strand, within SM_b20492at 510.120 kb on - strand, within SM_b20492at 510.127 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.133 kb on - strand, within SM_b20492at 510.200 kb on + strand, within SM_b20492at 510.201 kb on - strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.251 kb on - strand, within SM_b20492at 510.327 kb on - strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.379 kb on - strandat 510.379 kb on - strandat 510.379 kb on - strandat 510.379 kb on - strandat 510.668 kb on + strand, within SM_b20493at 510.668 kb on + strand, within SM_b20493at 510.669 kb on - strand, within SM_b20493at 510.669 kb on - strand, within SM_b20493at 510.761 kb on - strand, within SM_b20493at 510.835 kb on + strand, within SM_b20493at 510.864 kb on + strand, within SM_b20493at 510.864 kb on + strand, within SM_b20493at 510.865 kb on - strand, within SM_b20493at 510.873 kb on + strand, within SM_b20493at 510.874 kb on - strand, within SM_b20493at 510.874 kb on - strand, within SM_b20493at 510.910 kb on + strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.983 kb on + strand, within SM_b20493at 511.216 kb on - strand, within SM_b20493at 511.302 kb on - strandat 511.319 kb on - strandat 511.319 kb on - strandat 511.434 kb on - strandat 511.458 kb on + strandat 511.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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508,596 - +0.3
508,617 + +0.4
508,618 - +0.3
508,699 + +0.6
508,700 - -0.1
508,775 + SM_b20491 0.19 +0.2
508,865 + SM_b20491 0.34 +1.7
508,866 - SM_b20491 0.34 +0.5
508,896 - SM_b20491 0.40 -0.8
508,903 + SM_b20491 0.41 +0.8
508,904 - SM_b20491 0.41 -0.1
508,933 - SM_b20491 0.46 +0.6
509,043 + SM_b20491 0.65 -0.2
509,046 + SM_b20491 0.65 +0.6
509,047 - SM_b20491 0.66 +0.2
509,153 + SM_b20491 0.84 -1.5
509,170 + SM_b20491 0.87 +0.8
509,171 - SM_b20491 0.87 +2.0
509,185 + SM_b20491 0.89 +0.2
509,209 + -2.7
509,209 + +0.4
509,209 + -0.6
509,209 + -0.5
509,209 + +1.0
509,210 - -0.3
509,213 + +2.0
509,213 + +0.5
509,213 + -0.0
509,214 - -0.2
509,251 - -0.6
509,263 + +2.6
509,263 + -0.3
509,264 - +1.2
509,298 + +0.1
509,387 + +1.4
509,388 - +0.2
509,588 + -0.3
509,588 + -0.2
509,589 - +0.4
509,592 - -0.0
509,956 - SM_b20492 0.43 -1.1
509,997 + SM_b20492 0.48 +0.8
509,998 - SM_b20492 0.48 +2.0
510,009 + SM_b20492 0.49 -1.2
510,010 - SM_b20492 0.49 +0.3
510,010 - SM_b20492 0.49 -0.2
510,119 + SM_b20492 0.61 +0.1
510,119 + SM_b20492 0.61 -0.2
510,120 - SM_b20492 0.61 +0.1
510,120 - SM_b20492 0.61 +1.8
510,127 + SM_b20492 0.62 -0.4
510,132 + SM_b20492 0.63 -0.2
510,132 + SM_b20492 0.63 +0.8
510,132 + SM_b20492 0.63 -0.0
510,133 - SM_b20492 0.63 +2.2
510,200 + SM_b20492 0.70 -0.1
510,201 - SM_b20492 0.70 -0.2
510,250 + SM_b20492 0.76 +1.0
510,250 + SM_b20492 0.76 -1.1
510,250 + SM_b20492 0.76 -0.2
510,250 + SM_b20492 0.76 -0.6
510,250 + SM_b20492 0.76 +0.2
510,251 - SM_b20492 0.76 -0.4
510,327 - SM_b20492 0.84 +0.2
510,328 + SM_b20492 0.84 -0.1
510,328 + SM_b20492 0.84 +1.0
510,328 + SM_b20492 0.84 +1.0
510,328 + SM_b20492 0.84 -2.3
510,329 - SM_b20492 0.84 -1.1
510,329 - SM_b20492 0.84 +0.5
510,329 - SM_b20492 0.84 +0.4
510,378 + SM_b20492 0.90 +1.5
510,378 + SM_b20492 0.90 +0.1
510,378 + SM_b20492 0.90 +0.6
510,379 - +1.7
510,379 - -1.0
510,379 - +0.2
510,379 - +0.2
510,668 + SM_b20493 0.11 -0.7
510,668 + SM_b20493 0.11 +0.4
510,669 - SM_b20493 0.12 +0.4
510,669 - SM_b20493 0.12 -0.7
510,761 - SM_b20493 0.24 +0.4
510,835 + SM_b20493 0.34 +0.4
510,864 + SM_b20493 0.38 -0.4
510,864 + SM_b20493 0.38 -0.7
510,865 - SM_b20493 0.38 +0.9
510,873 + SM_b20493 0.39 -2.5
510,874 - SM_b20493 0.39 -2.1
510,874 - SM_b20493 0.39 +0.2
510,910 + SM_b20493 0.44 -0.0
510,911 - SM_b20493 0.44 +1.1
510,911 - SM_b20493 0.44 +0.4
510,911 - SM_b20493 0.44 +0.4
510,911 - SM_b20493 0.44 +0.7
510,911 - SM_b20493 0.44 -0.5
510,911 - SM_b20493 0.44 +1.4
510,911 - SM_b20493 0.44 +1.6
510,983 + SM_b20493 0.54 +0.0
511,216 - SM_b20493 0.86 -0.7
511,302 - -0.2
511,319 - -0.3
511,319 - -0.4
511,434 - +0.3
511,458 + +0.6
511,459 - +0.1

Or see this region's nucleotide sequence