Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20404 and SM_b20405 are separated by 12 nucleotides SM_b20405 and SM_b20406 are separated by 127 nucleotides
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
SM_b20405: SM_b20405 - transcriptional regulator, at 419,112 to 419,891
_b20405
SM_b20406: SM_b20406 - 5-oxoprolinase, at 420,019 to 422,133
_b20406
Position (kb) 419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.162 kb on - strand, within SM_b20404 at 418.162 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.320 kb on - strand, within SM_b20404 at 418.365 kb on - strand, within SM_b20404 at 418.384 kb on + strand, within SM_b20404 at 418.384 kb on + strand, within SM_b20404 at 418.385 kb on - strand, within SM_b20404 at 418.385 kb on - strand, within SM_b20404 at 418.464 kb on + strand, within SM_b20404 at 418.662 kb on - strand, within SM_b20404 at 418.837 kb on - strand, within SM_b20404 at 419.060 kb on + strand at 419.182 kb on + strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.183 kb on - strand at 419.530 kb on - strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.581 kb on + strand, within SM_b20405 at 419.676 kb on + strand, within SM_b20405 at 419.677 kb on - strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.680 kb on + strand, within SM_b20405 at 419.681 kb on - strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.683 kb on + strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.684 kb on - strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.687 kb on + strand, within SM_b20405 at 419.688 kb on - strand, within SM_b20405 at 419.762 kb on - strand, within SM_b20405 at 419.808 kb on - strand, within SM_b20405 at 419.901 kb on + strand at 419.901 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.966 kb on + strand at 419.967 kb on - strand at 419.967 kb on - strand at 419.997 kb on + strand at 419.998 kb on - strand at 420.168 kb on + strand at 420.212 kb on - strand at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.335 kb on - strand, within SM_b20406 at 420.458 kb on - strand, within SM_b20406 at 420.552 kb on - strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.619 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.621 kb on + strand, within SM_b20406 at 420.688 kb on + strand, within SM_b20406 at 420.723 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.741 kb on + strand, within SM_b20406 at 420.742 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.866 kb on - strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406 at 420.888 kb on + strand, within SM_b20406
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 418,162 - SM_b20404 0.58 +0.5 418,162 - SM_b20404 0.58 +2.1 418,320 - SM_b20404 0.65 -0.9 418,320 - SM_b20404 0.65 -0.4 418,320 - SM_b20404 0.65 -0.1 418,365 - SM_b20404 0.67 -0.6 418,384 + SM_b20404 0.68 +1.1 418,384 + SM_b20404 0.68 -0.1 418,385 - SM_b20404 0.68 +0.1 418,385 - SM_b20404 0.68 +0.2 418,464 + SM_b20404 0.72 -0.6 418,662 - SM_b20404 0.80 +0.1 418,837 - SM_b20404 0.88 +0.3 419,060 + -0.5 419,182 + -1.0 419,183 - +0.1 419,183 - -0.1 419,183 - -0.2 419,530 - SM_b20405 0.54 -1.7 419,581 + SM_b20405 0.60 +0.9 419,581 + SM_b20405 0.60 -0.3 419,676 + SM_b20405 0.72 -0.6 419,677 - SM_b20405 0.72 -0.5 419,680 + SM_b20405 0.73 +0.9 419,680 + SM_b20405 0.73 -0.2 419,680 + SM_b20405 0.73 +1.5 419,680 + SM_b20405 0.73 +0.2 419,681 - SM_b20405 0.73 +0.1 419,683 + SM_b20405 0.73 +1.2 419,683 + SM_b20405 0.73 -0.2 419,684 - SM_b20405 0.73 -0.7 419,684 - SM_b20405 0.73 +0.2 419,687 + SM_b20405 0.74 +0.5 419,687 + SM_b20405 0.74 +0.8 419,688 - SM_b20405 0.74 +0.6 419,762 - SM_b20405 0.83 -0.4 419,808 - SM_b20405 0.89 +0.6 419,901 + -0.3 419,901 + +1.6 419,966 + -0.9 419,966 + -0.4 419,966 + -0.3 419,966 + -0.9 419,967 - -0.5 419,967 - +0.9 419,997 + +2.3 419,998 - -0.1 420,168 + -0.8 420,212 - +1.2 420,335 - SM_b20406 0.15 +0.2 420,335 - SM_b20406 0.15 -0.9 420,335 - SM_b20406 0.15 -1.3 420,458 - SM_b20406 0.21 +0.1 420,552 - SM_b20406 0.25 -0.5 420,619 + SM_b20406 0.28 -0.4 420,619 + SM_b20406 0.28 -0.3 420,621 + SM_b20406 0.28 -1.3 420,621 + SM_b20406 0.28 +0.1 420,688 + SM_b20406 0.32 -0.5 420,723 + SM_b20406 0.33 +2.6 420,741 + SM_b20406 0.34 -0.1 420,741 + SM_b20406 0.34 -0.2 420,742 - SM_b20406 0.34 -1.9 420,866 - SM_b20406 0.40 -0.4 420,866 - SM_b20406 0.40 -0.2 420,888 + SM_b20406 0.41 -2.8 420,888 + SM_b20406 0.41 +0.3
Or see this region's nucleotide sequence