Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20329

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20328 and SM_b20329 are separated by 165 nucleotidesSM_b20329 and SM_b20330 overlap by 4 nucleotides SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data), at 331,283 to 332,311 _b20328 SM_b20329: SM_b20329 - required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data), at 332,477 to 333,289 _b20329 SM_b20330: SM_b20330 - glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data), at 333,286 to 334,383 _b20330 Position (kb) 332 333 334Strain fitness (log2 ratio) -1 0 1 2 3 4at 331.549 kb on + strand, within SM_b20328at 331.559 kb on + strand, within SM_b20328at 331.662 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.850 kb on + strand, within SM_b20328at 331.851 kb on - strand, within SM_b20328at 331.897 kb on - strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.033 kb on + strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.034 kb on - strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.141 kb on + strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.142 kb on - strand, within SM_b20328at 332.143 kb on + strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.144 kb on - strand, within SM_b20328at 332.147 kb on + strand, within SM_b20328at 332.148 kb on - strand, within SM_b20328at 332.395 kb on + strandat 332.396 kb on - strandat 332.751 kb on + strand, within SM_b20329at 332.751 kb on + strand, within SM_b20329at 332.752 kb on - strand, within SM_b20329at 332.790 kb on + strand, within SM_b20329at 332.790 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.963 kb on + strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 332.964 kb on - strand, within SM_b20329at 333.073 kb on + strand, within SM_b20329at 333.073 kb on + strand, within SM_b20329at 333.081 kb on - strand, within SM_b20329at 333.130 kb on - strand, within SM_b20329at 333.130 kb on - strand, within SM_b20329at 333.164 kb on + strand, within SM_b20329at 333.165 kb on - strand, within SM_b20329at 333.166 kb on + strand, within SM_b20329at 333.166 kb on + strandat 333.182 kb on + strand, within SM_b20329at 333.182 kb on + strand, within SM_b20329at 333.183 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329at 333.185 kb on - strand, within SM_b20329at 333.748 kb on + strand, within SM_b20330at 333.748 kb on + strand, within SM_b20330at 333.749 kb on - strand, within SM_b20330at 333.749 kb on - strand, within SM_b20330at 333.967 kb on + strandat 333.968 kb on - strand, within SM_b20330at 334.119 kb on + strand, within SM_b20330at 334.119 kb on + strand, within SM_b20330at 334.213 kb on + strand, within SM_b20330at 334.214 kb on - strand, within SM_b20330at 334.214 kb on - strand, within SM_b20330

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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331,549 + SM_b20328 0.26 +0.9
331,559 + SM_b20328 0.27 -0.2
331,662 + SM_b20328 0.37 +0.8
331,850 + SM_b20328 0.55 -0.9
331,850 + SM_b20328 0.55 -1.5
331,851 - SM_b20328 0.55 -1.0
331,897 - SM_b20328 0.60 +2.7
332,033 + SM_b20328 0.73 -0.9
332,033 + SM_b20328 0.73 +1.4
332,033 + SM_b20328 0.73 +0.7
332,033 + SM_b20328 0.73 +0.1
332,033 + SM_b20328 0.73 -0.5
332,033 + SM_b20328 0.73 -0.3
332,034 - SM_b20328 0.73 +0.2
332,034 - SM_b20328 0.73 -0.1
332,034 - SM_b20328 0.73 -0.8
332,141 + SM_b20328 0.83 -0.7
332,141 + SM_b20328 0.83 -0.3
332,142 - SM_b20328 0.83 -0.3
332,142 - SM_b20328 0.83 -1.2
332,142 - SM_b20328 0.83 -0.2
332,142 - SM_b20328 0.83 +0.8
332,143 + SM_b20328 0.84 -0.2
332,144 - SM_b20328 0.84 -0.1
332,144 - SM_b20328 0.84 -0.7
332,144 - SM_b20328 0.84 +0.8
332,144 - SM_b20328 0.84 -0.6
332,144 - SM_b20328 0.84 -0.7
332,147 + SM_b20328 0.84 +0.1
332,148 - SM_b20328 0.84 -0.9
332,395 + +0.3
332,396 - -1.5
332,751 + SM_b20329 0.34 +2.7
332,751 + SM_b20329 0.34 +1.3
332,752 - SM_b20329 0.34 +0.5
332,790 + SM_b20329 0.38 +1.3
332,790 + SM_b20329 0.38 -0.2
332,963 + SM_b20329 0.60 -1.2
332,963 + SM_b20329 0.60 -0.7
332,963 + SM_b20329 0.60 +0.2
332,963 + SM_b20329 0.60 -0.2
332,964 - SM_b20329 0.60 -0.2
332,964 - SM_b20329 0.60 +0.2
332,964 - SM_b20329 0.60 -0.3
333,073 + SM_b20329 0.73 -1.0
333,073 + SM_b20329 0.73 -0.1
333,081 - SM_b20329 0.74 +0.1
333,130 - SM_b20329 0.80 +1.5
333,130 - SM_b20329 0.80 -0.3
333,164 + SM_b20329 0.85 -0.1
333,165 - SM_b20329 0.85 -1.1
333,166 + SM_b20329 0.85 +0.9
333,166 + +2.1
333,182 + SM_b20329 0.87 +0.8
333,182 + SM_b20329 0.87 +0.7
333,183 - SM_b20329 0.87 -0.2
333,185 - SM_b20329 0.87 +0.5
333,185 - SM_b20329 0.87 +0.3
333,185 - SM_b20329 0.87 -0.4
333,748 + SM_b20330 0.42 -0.1
333,748 + SM_b20330 0.42 +0.8
333,749 - SM_b20330 0.42 +2.0
333,749 - SM_b20330 0.42 +0.3
333,967 + +4.7
333,968 - SM_b20330 0.62 -0.2
334,119 + SM_b20330 0.76 -0.5
334,119 + SM_b20330 0.76 +0.4
334,213 + SM_b20330 0.84 -0.2
334,214 - SM_b20330 0.85 +1.1
334,214 - SM_b20330 0.85 +0.0

Or see this region's nucleotide sequence