Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20297 and SM_b20298 overlap by 4 nucleotides SM_b20298 and SM_b20299 are separated by 13 nucleotides
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682
_b20298
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
Position (kb) 304
305
306 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 303.897 kb on + strand, within SM_b20297 at 303.898 kb on - strand, within SM_b20297 at 303.935 kb on + strand, within SM_b20297 at 303.952 kb on + strand, within SM_b20297 at 303.953 kb on - strand, within SM_b20297 at 304.028 kb on + strand, within SM_b20297 at 304.029 kb on - strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.283 kb on - strand, within SM_b20297 at 304.350 kb on + strand, within SM_b20297 at 304.351 kb on - strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.383 kb on - strand, within SM_b20297 at 304.646 kb on - strand at 305.102 kb on - strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.170 kb on - strand, within SM_b20298 at 305.219 kb on + strand, within SM_b20298 at 305.220 kb on - strand, within SM_b20298 at 305.371 kb on + strand, within SM_b20298 at 305.372 kb on - strand, within SM_b20298 at 305.596 kb on + strand at 305.596 kb on + strand at 305.596 kb on + strand at 305.597 kb on - strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.599 kb on - strand at 305.599 kb on - strand at 305.693 kb on - strand at 305.693 kb on - strand at 305.714 kb on + strand at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.873 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.181 kb on + strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.242 kb on + strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.314 kb on - strand, within SM_b20299 at 306.594 kb on - strand at 306.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 303,897 + SM_b20297 0.33 +0.3 303,898 - SM_b20297 0.33 +0.6 303,935 + SM_b20297 0.36 +0.3 303,952 + SM_b20297 0.38 -0.4 303,953 - SM_b20297 0.38 -0.3 304,028 + SM_b20297 0.44 -0.3 304,029 - SM_b20297 0.44 -4.1 304,052 + SM_b20297 0.45 +0.0 304,052 + SM_b20297 0.45 +0.1 304,052 + SM_b20297 0.45 +0.6 304,052 + SM_b20297 0.45 +0.4 304,052 + SM_b20297 0.45 +1.0 304,053 - SM_b20297 0.46 -0.3 304,053 - SM_b20297 0.46 -0.4 304,053 - SM_b20297 0.46 -0.2 304,283 - SM_b20297 0.63 -0.7 304,350 + SM_b20297 0.69 +1.1 304,351 - SM_b20297 0.69 -0.5 304,382 + SM_b20297 0.71 +6.3 304,382 + SM_b20297 0.71 +0.1 304,382 + SM_b20297 0.71 +0.2 304,383 - SM_b20297 0.71 -0.4 304,646 - -1.1 305,102 - SM_b20298 0.38 +0.3 305,167 + SM_b20298 0.45 +0.2 305,167 + SM_b20298 0.45 +0.4 305,167 + SM_b20298 0.45 +0.6 305,167 + SM_b20298 0.45 -1.1 305,170 - SM_b20298 0.45 +0.5 305,219 + SM_b20298 0.50 +1.0 305,220 - SM_b20298 0.51 +0.6 305,371 + SM_b20298 0.67 +1.0 305,372 - SM_b20298 0.67 +1.5 305,596 + +0.3 305,596 + -0.6 305,596 + -0.0 305,597 - +0.7 305,598 + +0.2 305,598 + -0.3 305,598 + +0.1 305,599 - +1.1 305,599 - -0.2 305,693 - +1.1 305,693 - -0.4 305,714 + +0.1 305,816 + SM_b20299 0.13 +0.2 305,816 + SM_b20299 0.13 -0.2 305,816 + SM_b20299 0.13 -0.2 305,817 - SM_b20299 0.13 -0.2 305,817 - SM_b20299 0.13 -0.1 305,817 - SM_b20299 0.13 -0.0 305,873 + SM_b20299 0.20 -1.2 306,017 + SM_b20299 0.36 -1.6 306,017 + SM_b20299 0.36 -4.0 306,021 - SM_b20299 0.36 -2.1 306,021 - SM_b20299 0.36 -0.8 306,096 - SM_b20299 0.44 -0.1 306,096 - SM_b20299 0.44 -1.1 306,097 + SM_b20299 0.45 +1.0 306,097 + SM_b20299 0.45 +0.1 306,098 - SM_b20299 0.45 +0.3 306,098 - SM_b20299 0.45 -0.8 306,181 + SM_b20299 0.54 +0.2 306,182 - SM_b20299 0.54 -0.1 306,182 - SM_b20299 0.54 -0.8 306,182 - SM_b20299 0.54 -0.1 306,242 + SM_b20299 0.61 +0.9 306,243 - SM_b20299 0.61 -1.1 306,243 - SM_b20299 0.61 -1.7 306,243 - SM_b20299 0.61 -0.3 306,312 - SM_b20299 0.68 -0.5 306,312 - SM_b20299 0.68 -0.5 306,314 - SM_b20299 0.69 +1.4 306,594 - +2.5 306,661 - -0.1
Or see this region's nucleotide sequence