Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20297

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20295 and SM_b20296 are separated by 55 nucleotidesSM_b20296 and SM_b20297 are separated by 0 nucleotidesSM_b20297 and SM_b20298 overlap by 4 nucleotidesSM_b20298 and SM_b20299 are separated by 13 nucleotides SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895 _b20295 SM_b20296: SM_b20296 - permease, at 302,951 to 303,469 _b20296 SM_b20297: SM_b20297 - permease, at 303,470 to 304,750 _b20297 SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682 _b20298 SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595 _b20299 Position (kb) 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 302.506 kb on + strand, within SM_b20295at 302.506 kb on + strand, within SM_b20295at 302.506 kb on + strand, within SM_b20295at 302.507 kb on - strand, within SM_b20295at 302.507 kb on - strand, within SM_b20295at 302.833 kb on + strandat 303.176 kb on - strand, within SM_b20296at 303.267 kb on - strand, within SM_b20296at 303.267 kb on - strand, within SM_b20296at 303.269 kb on + strand, within SM_b20296at 303.270 kb on - strand, within SM_b20296at 303.270 kb on - strand, within SM_b20296at 303.461 kb on + strandat 303.462 kb on - strandat 303.462 kb on - strandat 303.467 kb on + strandat 303.468 kb on - strandat 303.554 kb on + strandat 303.555 kb on - strandat 303.725 kb on - strand, within SM_b20297at 303.725 kb on - strand, within SM_b20297at 303.897 kb on + strand, within SM_b20297at 303.898 kb on - strand, within SM_b20297at 303.935 kb on + strand, within SM_b20297at 303.952 kb on + strand, within SM_b20297at 303.953 kb on - strand, within SM_b20297at 304.028 kb on + strand, within SM_b20297at 304.029 kb on - strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.283 kb on - strand, within SM_b20297at 304.350 kb on + strand, within SM_b20297at 304.351 kb on - strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.383 kb on - strand, within SM_b20297at 304.646 kb on - strandat 305.102 kb on - strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.170 kb on - strand, within SM_b20298at 305.219 kb on + strand, within SM_b20298at 305.220 kb on - strand, within SM_b20298at 305.371 kb on + strand, within SM_b20298at 305.372 kb on - strand, within SM_b20298at 305.596 kb on + strandat 305.596 kb on + strandat 305.596 kb on + strandat 305.597 kb on - strandat 305.598 kb on + strandat 305.598 kb on + strandat 305.598 kb on + strandat 305.599 kb on - strandat 305.599 kb on - strandat 305.693 kb on - strandat 305.693 kb on - strandat 305.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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302,506 + SM_b20295 0.60 +0.2
302,506 + SM_b20295 0.60 -0.1
302,506 + SM_b20295 0.60 -0.7
302,507 - SM_b20295 0.60 +1.2
302,507 - SM_b20295 0.60 -2.3
302,833 + -1.1
303,176 - SM_b20296 0.43 +0.5
303,267 - SM_b20296 0.61 -0.3
303,267 - SM_b20296 0.61 -1.5
303,269 + SM_b20296 0.61 +0.7
303,270 - SM_b20296 0.61 -1.2
303,270 - SM_b20296 0.61 +0.3
303,461 + +0.3
303,462 - +0.3
303,462 - +0.2
303,467 + +0.1
303,468 - -0.6
303,554 + -0.1
303,555 - +0.1
303,725 - SM_b20297 0.20 +0.5
303,725 - SM_b20297 0.20 +0.2
303,897 + SM_b20297 0.33 +0.3
303,898 - SM_b20297 0.33 +0.6
303,935 + SM_b20297 0.36 +0.3
303,952 + SM_b20297 0.38 -0.4
303,953 - SM_b20297 0.38 -0.3
304,028 + SM_b20297 0.44 -0.3
304,029 - SM_b20297 0.44 -4.1
304,052 + SM_b20297 0.45 +0.0
304,052 + SM_b20297 0.45 +0.1
304,052 + SM_b20297 0.45 +0.6
304,052 + SM_b20297 0.45 +0.4
304,052 + SM_b20297 0.45 +1.0
304,053 - SM_b20297 0.46 -0.3
304,053 - SM_b20297 0.46 -0.4
304,053 - SM_b20297 0.46 -0.2
304,283 - SM_b20297 0.63 -0.7
304,350 + SM_b20297 0.69 +1.1
304,351 - SM_b20297 0.69 -0.5
304,382 + SM_b20297 0.71 +6.3
304,382 + SM_b20297 0.71 +0.1
304,382 + SM_b20297 0.71 +0.2
304,383 - SM_b20297 0.71 -0.4
304,646 - -1.1
305,102 - SM_b20298 0.38 +0.3
305,167 + SM_b20298 0.45 +0.2
305,167 + SM_b20298 0.45 +0.4
305,167 + SM_b20298 0.45 +0.6
305,167 + SM_b20298 0.45 -1.1
305,170 - SM_b20298 0.45 +0.5
305,219 + SM_b20298 0.50 +1.0
305,220 - SM_b20298 0.51 +0.6
305,371 + SM_b20298 0.67 +1.0
305,372 - SM_b20298 0.67 +1.5
305,596 + +0.3
305,596 + -0.6
305,596 + -0.0
305,597 - +0.7
305,598 + +0.2
305,598 + -0.3
305,598 + +0.1
305,599 - +1.1
305,599 - -0.2
305,693 - +1.1
305,693 - -0.4
305,714 + +0.1

Or see this region's nucleotide sequence