Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20163 and SM_b20164 overlap by 4 nucleotides SM_b20164 and SM_b20165 are separated by 106 nucleotides SM_b20165 and SM_b20166 overlap by 4 nucleotides
SM_b20163: SM_b20163 - hypothetical protein, at 180,811 to 181,980
_b20163
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998
_b20165
SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348
_b20166
Position (kb) 181
182
183
184
185 Strain fitness (log2 ratio) -1
0
1
2 at 181.261 kb on - strand, within SM_b20163 at 181.261 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.622 kb on - strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.805 kb on - strand, within SM_b20163 at 181.895 kb on - strand at 182.163 kb on - strand at 182.163 kb on - strand at 182.219 kb on - strand, within SM_b20164 at 182.368 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 183.510 kb on + strand, within SM_b20164 at 183.510 kb on + strand, within SM_b20164 at 183.511 kb on - strand, within SM_b20164 at 183.513 kb on - strand, within SM_b20164 at 183.568 kb on + strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.595 kb on + strand, within SM_b20164 at 184.006 kb on - strand at 184.034 kb on - strand at 184.267 kb on + strand at 184.268 kb on - strand at 184.332 kb on + strand at 184.332 kb on + strand at 184.399 kb on + strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.576 kb on + strand, within SM_b20165 at 184.577 kb on - strand, within SM_b20165 at 184.609 kb on + strand, within SM_b20165 at 184.610 kb on - strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.897 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.149 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 181,261 - SM_b20163 0.38 -0.1 181,261 - SM_b20163 0.38 +0.0 181,535 - SM_b20163 0.62 +2.7 181,535 - SM_b20163 0.62 +0.3 181,535 - SM_b20163 0.62 -0.9 181,621 + SM_b20163 0.69 +0.1 181,621 + SM_b20163 0.69 +0.3 181,622 - SM_b20163 0.69 +2.7 181,804 + SM_b20163 0.85 +0.8 181,804 + SM_b20163 0.85 +1.0 181,805 - SM_b20163 0.85 +0.7 181,895 - -0.6 182,163 - -0.0 182,163 - -0.2 182,219 - SM_b20164 0.11 +1.4 182,368 - SM_b20164 0.17 +0.0 182,777 - SM_b20164 0.36 -0.0 182,777 - SM_b20164 0.36 +0.5 182,777 - SM_b20164 0.36 +0.4 183,510 + SM_b20164 0.68 -0.8 183,510 + SM_b20164 0.68 -0.8 183,511 - SM_b20164 0.68 +0.4 183,513 - SM_b20164 0.68 +2.7 183,568 + SM_b20164 0.71 +0.2 183,569 - SM_b20164 0.71 +0.9 183,569 - SM_b20164 0.71 +0.9 183,574 + SM_b20164 0.71 +1.3 183,574 + SM_b20164 0.71 +0.2 183,575 - SM_b20164 0.71 -0.8 183,575 - SM_b20164 0.71 +0.1 183,575 - SM_b20164 0.71 +0.4 183,595 + SM_b20164 0.72 +0.1 184,006 - -0.7 184,034 - -0.9 184,267 + -0.7 184,268 - -0.4 184,332 + +0.3 184,332 + +0.9 184,399 + SM_b20165 0.11 +0.3 184,484 - SM_b20165 0.23 -1.7 184,484 - SM_b20165 0.23 +0.2 184,576 + SM_b20165 0.37 -0.4 184,577 - SM_b20165 0.37 -0.9 184,609 + SM_b20165 0.42 +0.6 184,610 - SM_b20165 0.42 +0.0 184,699 + SM_b20165 0.55 -0.1 184,699 + SM_b20165 0.55 -0.4 184,699 + SM_b20165 0.55 +0.1 184,699 + SM_b20165 0.55 -0.4 184,897 + SM_b20165 0.85 -0.0 184,900 + SM_b20165 0.85 +0.2 184,900 + SM_b20165 0.85 -0.1 185,106 + SM_b20166 0.31 +0.4 185,106 + SM_b20166 0.31 +1.3 185,106 + SM_b20166 0.31 -1.0 185,149 + SM_b20166 0.44 -0.2 185,208 + SM_b20166 0.60 -0.3 185,208 + SM_b20166 0.60 +0.7 185,208 + SM_b20166 0.60 +0.4 185,209 - SM_b20166 0.60 +2.1 185,209 - SM_b20166 0.60 +2.1
Or see this region's nucleotide sequence