Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20097

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20095 and SM_b20096 are separated by 28 nucleotidesSM_b20096 and SM_b20097 are separated by 1 nucleotidesSM_b20097 and SM_b20098 are separated by 8 nucleotidesSM_b20098 and SM_b20099 overlap by 4 nucleotides SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024 _b20095 SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493 _b20096 SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724 _b20097 SM_b20098: SM_b20098 - hypothetical protein, at 106,733 to 107,128 _b20098 SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759 _b20099 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 104.512 kb on + strand, within SM_b20095at 105.022 kb on + strandat 105.022 kb on + strandat 105.080 kb on - strandat 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.113 kb on - strand, within SM_b20096at 105.146 kb on + strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.383 kb on + strand, within SM_b20096at 105.383 kb on + strand, within SM_b20096at 105.479 kb on + strandat 105.480 kb on - strandat 105.491 kb on + strandat 105.492 kb on - strandat 105.518 kb on + strandat 105.519 kb on - strandat 105.519 kb on - strandat 105.740 kb on - strand, within SM_b20097at 105.740 kb on - strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 106.236 kb on + strand, within SM_b20097at 106.437 kb on + strand, within SM_b20097at 106.473 kb on + strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.496 kb on - strand, within SM_b20097at 106.698 kb on + strandat 106.714 kb on + strandat 106.715 kb on - strandat 106.732 kb on + strandat 106.909 kb on + strand, within SM_b20098at 106.911 kb on - strand, within SM_b20098at 107.021 kb on - strand, within SM_b20098at 107.041 kb on + strand, within SM_b20098at 107.161 kb on + strandat 107.161 kb on + strandat 107.161 kb on + strandat 107.162 kb on - strandat 107.162 kb on - strandat 107.219 kb on + strandat 107.219 kb on + strandat 107.220 kb on - strandat 107.220 kb on - strandat 107.242 kb on + strandat 107.242 kb on + strandat 107.242 kb on + strandat 107.243 kb on - strandat 107.251 kb on + strandat 107.251 kb on + strandat 107.252 kb on - strandat 107.329 kb on + strand, within SM_b20099at 107.330 kb on - strand, within SM_b20099at 107.330 kb on - strand, within SM_b20099at 107.332 kb on + strand, within SM_b20099at 107.332 kb on + strand, within SM_b20099at 107.501 kb on - strand, within SM_b20099at 107.503 kb on + strand, within SM_b20099at 107.584 kb on + strand, within SM_b20099at 107.585 kb on - strand, within SM_b20099at 107.605 kb on + strand, within SM_b20099at 107.608 kb on + strand, within SM_b20099at 107.609 kb on - strand, within SM_b20099at 107.609 kb on - strand, within SM_b20099

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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104,512 + SM_b20095 0.72 -0.8
105,022 + +0.1
105,022 + +1.4
105,080 - -0.2
105,112 + SM_b20096 0.13 -0.5
105,112 + SM_b20096 0.13 -0.2
105,112 + SM_b20096 0.13 -0.1
105,112 + SM_b20096 0.13 +0.5
105,112 + SM_b20096 0.13 +2.1
105,113 - SM_b20096 0.14 -1.2
105,146 + SM_b20096 0.21 -0.0
105,147 - SM_b20096 0.21 -0.5
105,147 - SM_b20096 0.21 -0.1
105,147 - SM_b20096 0.21 -2.7
105,147 - SM_b20096 0.21 +1.8
105,383 + SM_b20096 0.75 +0.1
105,383 + SM_b20096 0.75 +0.6
105,479 + -1.2
105,480 - +1.7
105,491 + -1.0
105,492 - -0.6
105,518 + -0.1
105,519 - +0.7
105,519 - +0.1
105,740 - SM_b20097 0.20 -0.1
105,740 - SM_b20097 0.20 +0.1
105,970 + SM_b20097 0.39 -0.6
105,970 + SM_b20097 0.39 +0.5
105,970 + SM_b20097 0.39 -0.7
105,970 + SM_b20097 0.39 -0.5
105,971 - SM_b20097 0.39 -0.1
105,971 - SM_b20097 0.39 +0.9
105,971 - SM_b20097 0.39 -0.5
106,236 + SM_b20097 0.60 -1.4
106,437 + SM_b20097 0.77 +1.3
106,473 + SM_b20097 0.80 +0.6
106,474 - SM_b20097 0.80 +0.1
106,474 - SM_b20097 0.80 +0.4
106,474 - SM_b20097 0.80 +0.0
106,496 - SM_b20097 0.81 -1.4
106,698 + +0.0
106,714 + +0.6
106,715 - -0.3
106,732 + +1.6
106,909 + SM_b20098 0.44 -1.2
106,911 - SM_b20098 0.45 -0.4
107,021 - SM_b20098 0.73 +0.2
107,041 + SM_b20098 0.78 -0.7
107,161 + +0.4
107,161 + +0.6
107,161 + -0.1
107,162 - +1.3
107,162 - +0.7
107,219 + +0.4
107,219 + -0.3
107,220 - -0.1
107,220 - -1.1
107,242 + -1.7
107,242 + +0.2
107,242 + +1.5
107,243 - +0.3
107,251 + +0.4
107,251 + +0.6
107,252 - -0.1
107,329 + SM_b20099 0.12 +0.6
107,330 - SM_b20099 0.13 -2.4
107,330 - SM_b20099 0.13 -0.1
107,332 + SM_b20099 0.13 +1.6
107,332 + SM_b20099 0.13 +0.4
107,501 - SM_b20099 0.23 +0.4
107,503 + SM_b20099 0.23 +0.7
107,584 + SM_b20099 0.28 -2.3
107,585 - SM_b20099 0.28 -0.3
107,605 + SM_b20099 0.29 -2.0
107,608 + SM_b20099 0.30 -2.9
107,609 - SM_b20099 0.30 -0.0
107,609 - SM_b20099 0.30 -0.2

Or see this region's nucleotide sequence